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NSG1 neuronal vesicle trafficking associated 1 [ Gallus gallus (chicken) ]

Gene ID: 395251, updated on 17-Aug-2024

Summary

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Official Symbol
NSG1provided by CGNC
Official Full Name
neuronal vesicle trafficking associated 1provided by CGNC
Primary source
CGNC:49231
See related
Ensembl:ENSGALG00010009216
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See NSG1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (78101275..78122147)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (78080257..78101203)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 128 Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene Ly1 antibody reactive Neighboring gene syntaxin 18 Neighboring gene uncharacterized LOC112532372

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The distribution of neuron-specific gene family member 1 in brain and germ cells: Implications for the regulation of germ-line development by brain. Rengaraj D, et al. Dev Dyn, 2011 Apr. PMID 21404368
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Expression of NSG1 in two apparently unrelated cell types such as neurons and germ cells suggests NSG1 roles in neurons and germ-cells chemotaxis and endocytotic machinery.
    Title: The distribution of neuron-specific gene family member 1 in brain and germ cells: Implications for the regulation of germ-line development by brain.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled dopamine receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal vesicle trafficking-associated protein 1
Names
LZ1
Protein LZ1
neuron specific gene family member 1
neuron-specific protein family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204565.2 → NP_989896.1  neuronal vesicle trafficking-associated protein 1

    See identical proteins and their annotated locations for NP_989896.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000074
    UniProtKB/Swiss-Prot
    Q8QFP1
    Related
    ENSGALP00010012589.1, ENSGALT00010021977.1
    Conserved Domains (1) summary
    pfam06387
    Location:1 → 177
    Calcyon; D1 dopamine receptor-interacting protein (calcyon)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    78101275..78122147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040698688.2 → XP_040554622.1  neuronal vesicle trafficking-associated protein 1 isoform X1

    Conserved Domains (1) summary
    pfam06387
    Location:1 → 140
    Calcyon; D1 dopamine receptor-interacting protein (calcyon)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    78080257..78101203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046915458.1 → XP_046771414.1  neuronal vesicle trafficking-associated protein 1 isoform X1

  2. XM_046915457.1 → XP_046771413.1  neuronal vesicle trafficking-associated protein 1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8QFP1.1 GenPept UniProtKB/Swiss-Prot:Q8QFP1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials