RAD54B RAD54 homolog B (S. cerevisiae) [Gallus gallus (chicken)] - Gene

Summary

Symbol: RAD54Bprovided by CGNC
Full Name: RAD54 homolog B (S. cerevisiae)provided by CGNC
Primary source: CGNC:49325
See related: Ensembl:ENSGALG00010012212
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	2	NC_052533.1 (125656700..125719228, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	2	NC_052574.1 (125842102..125904730, complement)

Chromosome 2 - NC_052533.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP-dependent chromatin remodeler activity	IEA Inferred from Electronic Annotation more info	PubMed
enables DNA translocase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in double-strand break repair via homologous recombination	IEA Inferred from Electronic Annotation more info	PubMed
involved_in reciprocal meiotic recombination	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: DNA repair and recombination protein RAD54B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_204710.1 → NP_990041.1 DNA repair and recombination protein RAD54B

See identical proteins and their annotated locations for NP_990041.1

Status: PROVISIONAL

Source sequence(s)

AF178529

UniProtKB/Swiss-Prot

Q9DG67

Conserved Domains (4) summary

cd00046
Location:328 → 469

DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

pfam00176
Location:306 → 605

SNF2_N; SNF2 family N-terminal domain

pfam00271
Location:648 → 765

Helicase_C; Helicase conserved C-terminal domain

pfam11496
Location:554 → 836

HDA2-3; Class II histone deacetylase complex subunits 2 and 3

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

125656700..125719228 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015282912.4 → XP_015138398.2 DNA repair and recombination protein RAD54B isoform X1

UniProtKB/TrEMBL

A0A8V0YGV1

Conserved Domains (2) summary

COG0553
Location:302 → 822

HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

cd18066
Location:303 → 537

DEXHc_RAD54B; DEXH-box helicase domain of RAD54B
XM_015282911.4 → XP_015138397.2 DNA repair and recombination protein RAD54B isoform X1

UniProtKB/TrEMBL

A0A8V0YGV1

Related

ENSGALP00010016996.1, ENSGALT00010029281.1

Conserved Domains (2) summary

COG0553
Location:302 → 822

HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

cd18066
Location:303 → 537

DEXHc_RAD54B; DEXH-box helicase domain of RAD54B
XM_025147029.2 → XP_025002797.2 DNA repair and recombination protein RAD54B isoform X2

Conserved Domains (2) summary

COG0553
Location:196 → 716

HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

cd18066
Location:197 → 431

DEXHc_RAD54B; DEXH-box helicase domain of RAD54B
XM_040675462.2 → XP_040531396.1 DNA repair and recombination protein RAD54B isoform X3

Conserved Domains (2) summary

COG0553
Location:302 → 784

HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

cd18066
Location:303 → 537

DEXHc_RAD54B; DEXH-box helicase domain of RAD54B

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

125842102..125904730 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046910313.1 → XP_046766269.1 DNA repair and recombination protein RAD54B isoform X1
XM_046910312.1 → XP_046766268.1 DNA repair and recombination protein RAD54B isoform X1
XM_046910314.1 → XP_046766270.1 DNA repair and recombination protein RAD54B isoform X2
XM_046910315.1 → XP_046766271.1 DNA repair and recombination protein RAD54B isoform X3