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MKRN4P makorin ring finger protein 4, pseudogene [ Gallus gallus (chicken) ]

Gene ID: 395500, updated on 3-Dec-2024

Summary

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Symbol
MKRN4Pprovided by CGNC
Full Name
makorin ring finger protein 4, pseudogeneprovided by CGNC
Primary source
CGNC:49350
See related
Ensembl:ENSGALG00010013348
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
MKRN1
Orthologs
human mouse all
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Genomic context

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See MKRN4P in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (56822897..56847021, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (57123748..57147900, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 7A Neighboring gene solute carrier family 37 member 3 Neighboring gene RAB19, member RAS oncogene family Neighboring gene pseudouridine-5'-phosphate glycosidase-like Neighboring gene uncharacterized LOC121106531

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ancient source of a distinct gene family encoding proteins featuring RING and C(3)H zinc-finger motifs with abundant expression in developing brain and nervous system. Gray TA, et al. Genomics, 2000 May 15. PMID 10843807
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase makorin-1
Names
makorin 1
makorin ring finger protein 1
NP_990073.2
XP_015139918.2
XP_046759984.1
XP_046762572.1
XP_046762574.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204742.3 → NP_990073.2  E3 ubiquitin-protein ligase makorin-1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000012
    UniProtKB/TrEMBL
    A0A8V0YLY7, Q9PTI4
    Related
    ENSGALP00010018927.1, ENSGALT00010032137.1
    Conserved Domains (3) summary
    smart00356
    Location:48 → 74
    ZnF_C3H1; zinc finger
    PHA03096
    Location:211 → 360
    PHA03096; p28-like protein; Provisional
    cd16730
    Location:268 → 328
    RING-HC_MKRN1_3; RING finger, HC subclass, found in makorin-1 (MKRN1), makorin-3 (MKRN3), and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    56822897..56847021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015284432.4 → XP_015139918.2  E3 ubiquitin-protein ligase makorin-1 isoform X1

    UniProtKB/TrEMBL
    Q9PTI4
    Conserved Domains (3) summary
    smart00356
    Location:48 → 74
    ZnF_C3H1; zinc finger
    PHA03096
    Location:211 → 360
    PHA03096; p28-like protein; Provisional
    cd16730
    Location:268 → 328
    RING-HC_MKRN1_3; RING finger, HC subclass, found in makorin-1 (MKRN1), makorin-3 (MKRN3), and similar proteins

  2. XM_046904028.1 → XP_046759984.1  E3 ubiquitin-protein ligase makorin-1 isoform X2

    UniProtKB/TrEMBL
    Q9PTI4

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    57123748..57147900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046906616.1 → XP_046762572.1  E3 ubiquitin-protein ligase makorin-1 isoform X1

    UniProtKB/TrEMBL
    Q9PTI4

  2. XM_046906618.1 → XP_046762574.1  E3 ubiquitin-protein ligase makorin-1 isoform X2

    UniProtKB/TrEMBL
    Q9PTI4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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