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BARX2 BARX homeobox 2 [ Gallus gallus (chicken) ]

Gene ID: 395714, updated on 17-Aug-2024

Summary

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Symbol
BARX2provided by CGNC
Full Name
BARX homeobox 2provided by CGNC
Primary source
CGNC:813
See related
Ensembl:ENSGALG00010023485
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
BARX2B
Orthologs
human mouse all
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Genomic context

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See BARX2 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 24 NC_052555.1 (1400177..1427647)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 24 NC_052596.1 (1359807..1387311)

Chromosome 24 - NC_052555.1Genomic Context describing neighboring genes Neighboring gene Potassium inwardly rectifying channel subfamily J member 5 Neighboring gene potassium inwardly rectifying channel subfamily J member 1 Neighboring gene Rho GTPase activating protein 33 Neighboring gene uncharacterized LOC121107516 Neighboring gene transmembrane protein 45B Neighboring gene transmembrane protein 45 like Neighboring gene amyloid beta precursor like protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chick Barx2b, a marker for myogenic cells also expressed in branchial arches and neural structures. Smith DM, et al. Mech Dev, 1999 Feb. PMID 10072789
  2. The homeodomain protein Barx2 contains activator and repressor domains and interacts with members of the CREB family. Edelman DB, et al. J Biol Chem, 2000 Jul 14. PMID 10781615
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein BarH-like 2
Names
BarH-like homeobox 2
homeodomain transcription factor BARX2B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204896.2 → NP_990227.1  homeobox protein BarH-like 2

    See identical proteins and their annotated locations for NP_990227.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000341
    UniProtKB/TrEMBL
    A0A8V0ZT97, Q9W694
    Related
    ENSGALP00010034792.1, ENSGALT00010057207.1
    Conserved Domains (2) summary
    COG5576
    Location:124 → 231
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:129 → 182
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052555.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1400177..1427647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052596.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1359807..1387311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials