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CG3919 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39582, updated on 9-Dec-2024

Summary

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Official Symbol
CG3919provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0036423
Locus tag
Dmel_CG3919
See related
AllianceGenome:FB:FBgn0036423
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG3919
Summary
Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in germline cell; gonad; organism; and primordial germ cell. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See CG3919 in Genome Data Viewer
Location:
70D7-70D7; 3-42 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (14410626..14412732)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (14403726..14405832)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45233 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR46032 Neighboring gene stonewall Neighboring gene long non-coding RNA:CR46031 Neighboring gene big bang

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of big bang, a novel gene encoding for PDZ domain-containing proteins that are dynamically expressed throughout Drosophila development. Kim SY, et al. Gene Expr Patterns, 2006 Jun. PMID 16423565
  2. Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in Drosophila. Shukla V, et al. G3 (Bethesda), 2018 May 31. PMID 29669801, Free PMC Article
  3. The MADF-BESS domain factor Dip3 potentiates synergistic activation by Dorsal and Twist. Bhaskar V, et al. Gene, 2002 Oct 16. PMID 12459265
  4. Gene duplication, lineage-specific expansion, and subfunctionalization in the MADF-BESS family patterns the Drosophila wing hinge. Shukla V, et al. Genetics, 2014 Feb. PMID 24336749, Free PMC Article
  5. Stonewalling Drosophila stem cell differentiation by epigenetic controls. Maines JZ, et al. Development, 2007 Apr. PMID 17344229

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG3919-PB
CG3919-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    14410626..14412732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001274911.1 → NP_001261840.1  uncharacterized protein Dmel_CG3919, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261840.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PF86
    Conserved Domains (2) summary
    smart00595
    Location:20 → 100
    MADF; subfamily of SANT domain
    pfam02944
    Location:226 → 260
    BESS; BESS motif

  2. NM_140446.3 → NP_648703.4  uncharacterized protein Dmel_CG3919, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648703.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KUK4
    Conserved Domains (2) summary
    smart00595
    Location:20 → 100
    MADF; subfamily of SANT domain
    pfam02944
    Location:210 → 244
    BESS; BESS motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PF86 M9PF86
Q7KUK4 Q7KUK4
Q8T0A1 Q8T0A1

Gene LinkOut

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