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SERPIND1 serpin family D member 1 [ Gallus gallus (chicken) ]

Gene ID: 395877, updated on 17-Aug-2024

Summary

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Official Symbol
SERPIND1provided by CGNC
Official Full Name
serpin family D member 1provided by CGNC
Primary source
CGNC:958
See related
Ensembl:ENSGALG00010024208
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SERPIND1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (134965..143337, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (140539..148914, complement)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene clathrin, heavy chain-like 1 Neighboring gene synaptosome associated protein 29 Neighboring gene phosphatidylinositol 4-kinase alpha Neighboring gene uncharacterized LOC107051622 Neighboring gene hypermethylated in cancer 2 Neighboring gene ubiquitin conjugating enzyme E2 L3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in blood coagulation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparin cofactor 2
Names
heparin cofactor II
serpin peptidase inhibitor, clade D (heparin cofactor), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    134965..143337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001232766.7 → XP_001232767.1  heparin cofactor 2

    UniProtKB/TrEMBL
    A0A1D5PLZ2, A0A8V0ZYP8
    Related
    ENSGALP00010036034.1, ENSGALT00010059070.1
    Conserved Domains (1) summary
    cd02047
    Location:43 → 488
    serpinD1_HCF2; serpin family D member 1, Heparin cofactor II

  2. XM_040648289.2 → XP_040504223.1  heparin cofactor 2

    UniProtKB/TrEMBL
    A0A1D5PLZ2, A0A8V0ZYP8
    Related
    ENSGALP00010036033.1, ENSGALT00010059069.1
    Conserved Domains (1) summary
    cd02047
    Location:43 → 488
    serpinD1_HCF2; serpin family D member 1, Heparin cofactor II

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    140539..148914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040684234.2 → XP_040540168.1  heparin cofactor 2

    UniProtKB/TrEMBL
    A0A1D5PLZ2, A0A8V0ZYP8
    Conserved Domains (1) summary
    cd02047
    Location:43 → 488
    serpinD1_HCF2; serpin family D member 1, Heparin cofactor II

  2. XM_040684235.2 → XP_040540169.1  heparin cofactor 2

    UniProtKB/TrEMBL
    A0A1D5PLZ2, A0A8V0ZYP8
    Conserved Domains (1) summary
    cd02047
    Location:43 → 488
    serpinD1_HCF2; serpin family D member 1, Heparin cofactor II
Nucleotide Protein Strain
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