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CRCP CGRP receptor component [ Gallus gallus (chicken) ]

Gene ID: 396022, updated on 3-Dec-2024

Summary

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Official Symbol
CRCPprovided by CGNC
Official Full Name
CGRP receptor componentprovided by CGNC
Primary source
CGNC:49611
See related
Ensembl:ENSGALG00010029668
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
RCP9
Orthologs
human mouse all
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Genomic context

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See CRCP in Genome Data Viewer
Location:
chromosome: 19
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (5420079..5473880)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (5156248..5210019)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene vitamin K epoxide reductase complex subunit 1 like 1 Neighboring gene glucuronidase beta Neighboring gene tyrosylprotein sulfotransferase 1 Neighboring gene argininosuccinate lyase Neighboring gene argininosuccinate lyase 1 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene uncharacterized LOC124417311 Neighboring gene potassium channel tetramerization domain containing 7 Neighboring gene RAB guanine nucleotide exchange factor 1 Neighboring gene transmembrane protein 248 Neighboring gene microRNA 6585

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of terminally differentiated cell state by categorizing cDNA clones derived from chicken lens fibers. Sawada K, et al. Int J Dev Biol, 1996 Jun. PMID 8840185
  2. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
  3. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC9
Names
calcitonin gene-related peptide-receptor component protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001293292.2 → NP_001280221.1  DNA-directed RNA polymerase III subunit RPC9 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    UniProtKB/TrEMBL
    A0A8V1ALK0
    Related
    ENSGALP00010044439.1, ENSGALT00010071749.1
    Conserved Domains (1) summary
    smart00657
    Location:1 → 125
    RPOL4c; DNA-directed RNA-polymerase II subunit

  2. NM_001293293.2 → NP_001280222.1  DNA-directed RNA polymerase III subunit RPC9 isoform b

    See identical proteins and their annotated locations for NP_001280222.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    UniProtKB/TrEMBL
    A0A1D5NX38
    Conserved Domains (1) summary
    cl00638
    Location:1 → 80
    RNA_pol_Rpb4; RNA polymerase Rpb4

  3. NM_001293295.2 → NP_001280224.1  DNA-directed RNA polymerase III subunit RPC9 isoform b

    See identical proteins and their annotated locations for NP_001280224.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    UniProtKB/TrEMBL
    A0A1D5NX38
    Conserved Domains (1) summary
    cl00638
    Location:1 → 80
    RNA_pol_Rpb4; RNA polymerase Rpb4

  4. NM_001397816.1 → NP_001384745.1  DNA-directed RNA polymerase III subunit RPC9 isoform c

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    UniProtKB/TrEMBL
    A0A8V1AEI4, A0A8V1APQ6
    Conserved Domains (1) summary
    smart00657
    Location:33 → 152
    RPOL4c; DNA-directed RNA-polymerase II subunit

  5. NM_001397817.1 → NP_001384746.1  DNA-directed RNA polymerase III subunit RPC9 isoform c

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    UniProtKB/TrEMBL
    A0A8V1AEI4, A0A8V1APQ6
    Related
    ENSGALP00010044436.1, ENSGALT00010071746.1
    Conserved Domains (1) summary
    smart00657
    Location:33 → 152
    RPOL4c; DNA-directed RNA-polymerase II subunit

  6. NM_001397818.1 → NP_001384747.1  DNA-directed RNA polymerase III subunit RPC9 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    Conserved Domains (1) summary
    cl00638
    Location:1 → 80
    RNA_pol_Rpb4; RNA polymerase Rpb4

  7. NM_001397819.1 → NP_001384748.1  DNA-directed RNA polymerase III subunit RPC9 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    Conserved Domains (1) summary
    cl00638
    Location:1 → 80
    RNA_pol_Rpb4; RNA polymerase Rpb4

  8. NM_001397820.1 → NP_001384749.1  DNA-directed RNA polymerase III subunit RPC9 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000323
    Conserved Domains (1) summary
    cl00638
    Location:1 → 80
    RNA_pol_Rpb4; RNA polymerase Rpb4

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5420079..5473880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040650024.2 → XP_040505958.1  DNA-directed RNA polymerase III subunit RPC9 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AJW4, A0A8V1ALK0
    Related
    ENSGALP00010044443.1, ENSGALT00010071753.1
    Conserved Domains (1) summary
    smart00657
    Location:8 → 127
    RPOL4c; DNA-directed RNA-polymerase II subunit

  2. XM_015295677.4 → XP_015151163.2  DNA-directed RNA polymerase III subunit RPC9 isoform X3

    UniProtKB/TrEMBL
    A0A8V1APQ6
    Conserved Domains (1) summary
    smart00657
    Location:35 → 156
    RPOL4c; DNA-directed RNA-polymerase II subunit

  3. XM_046902294.1 → XP_046758250.1  DNA-directed RNA polymerase III subunit RPC9 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AN96
    Related
    ENSGALP00010044444.1, ENSGALT00010071754.1

  4. XM_040650025.1 → XP_040505959.1  DNA-directed RNA polymerase III subunit RPC9 isoform X2

    Conserved Domains (1) summary
    smart00657
    Location:11 → 121
    RPOL4c; DNA-directed RNA-polymerase II subunit

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5156248..5210019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046929914.1 → XP_046785870.1  DNA-directed RNA polymerase III subunit RPC9 isoform X6

    UniProtKB/TrEMBL
    A0A8V1ALK0

  2. XM_046929916.1 → XP_046785872.1  DNA-directed RNA polymerase III subunit RPC9 isoform X7

  3. XM_046929913.1 → XP_046785869.1  DNA-directed RNA polymerase III subunit RPC9 isoform X5

    UniProtKB/TrEMBL
    A0A8V1APQ6

  4. XM_046929912.1 → XP_046785868.1  DNA-directed RNA polymerase III subunit RPC9 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AN96

  5. XM_046929915.1 → XP_046785871.1  DNA-directed RNA polymerase III subunit RPC9 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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