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CG17839 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39616, updated on 9-Dec-2024

Summary

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Official Symbol
CG17839provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0036454
Locus tag
Dmel_CG17839
See related
AllianceGenome:FB:FBgn0036454
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
17839; CT39634; Dmel\CG17839
Summary
Located in nucleus. Is expressed in adult brain cell body rind; adult head; and spermatozoon. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG17839 in Genome Data Viewer
Location:
70F7-71A1; 3-42 cM
Exon count:
19
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (14805136..14882224)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (14798236..14875324)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene NHP2 Neighboring gene giant nuclei Neighboring gene long non-coding RNA:CR44702 Neighboring gene long non-coding RNA:CR45398

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell-Surface Proteomic Profiling in the Fly Brain Uncovers Wiring Regulators. Li J, et al. Cell, 2020 Jan 23. PMID 31955847, Free PMC Article
  2. Deconstruction of the beaten Path-Sidestep interaction network provides insights into neuromuscular system development. Li H, et al. Elife, 2017 Aug 15. PMID 28829740, Free PMC Article
  3. Inherent constraints on a polyfunctional tissue lead to a reproduction-immunity tradeoff. Gupta V, et al. BMC Biol, 2022 Jun 2. PMID 35655304, Free PMC Article
  4. BrainTrap: a database of 3D protein expression patterns in the Drosophila brain. Knowles-Barley S, et al. Database (Oxford), 2010 Jul 6. PMID 20624714, Free PMC Article
  5. Genetic Basis of Natural Variation in Spontaneous Grooming in Drosophila melanogaster. Yanagawa A, et al. G3 (Bethesda), 2020 Sep 2. PMID 32727922, Free PMC Article

See all (43) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

mobile_element

  • Loc: 14825181-14832850 mobile_element_type = transposon:Stalker2{}1001

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
uncharacterized protein
Names
CG17839-PB
CG17839-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    14805136..14882224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_206363.4 → NP_996085.2  uncharacterized protein Dmel_CG17839, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_996085.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KUK9
    Conserved Domains (5) summary
    smart00410
    Location:1126 → 1216
    IG_like; Immunoglobulin like
    cd00063
    Location:286 → 396
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00047
    Location:33 → 116
    ig; Immunoglobulin domain
    pfam01682
    Location:185 → 278
    DB; DB module
    cl11960
    Location:1134 → 1216
    Ig; Immunoglobulin domain

  2. NM_001043141.3 → NP_001036606.1  uncharacterized protein Dmel_CG17839, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001036606.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0E8E6, Q86NP9
    Conserved Domains (4) summary
    smart00410
    Location:35 → 129
    IG_like; Immunoglobulin like
    cd00063
    Location:286 → 396
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam01682
    Location:185 → 278
    DB; DB module
    cl11960
    Location:33 → 116
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0E8E6 Q0E8E6
Q7KUK9 Q7KUK9

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