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VSNL1 visinin like 1 [ Gallus gallus (chicken) ]

Gene ID: 396189, updated on 3-Dec-2024

Summary

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Official Symbol
VSNL1provided by CGNC
Official Full Name
visinin like 1provided by CGNC
Primary source
CGNC:12327
See related
Ensembl:ENSGALG00010002364
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See VSNL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (99825981..99902932)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (99651820..99728735)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121113183 Neighboring gene RAD51 associated protein 2 Neighboring gene structural maintenance of chromosomes 6 Neighboring gene GEN1, Holliday junction 5' flap endonuclease

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VILIP, a cognate protein of the retinal calcium binding proteins visinin and recoverin, is expressed in the developing chicken brain. Lenz SE, et al. Brain Res Mol Brain Res, 1992 Sep. PMID 1359372
  2. NeuroD induces the expression of visinin and calretinin by proliferating cells derived from toxin-damaged chicken retina. Fischer AJ, et al. Dev Dyn, 2004 Mar. PMID 14991711
  3. The neuronal EF-hand Ca(2+)-binding protein VILIP: interaction with cell membrane and actin-based cytoskeleton. Lenz SE, et al. Biochem Biophys Res Commun, 1996 Aug 23. PMID 8780737
  4. Conserved BK channel-protein interactions reveal signals relevant to cell death and survival. Sokolowski B, et al. PLoS One, 2011. PMID 22174833, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. visinin and calretinin are induced by NeuroD in developing retinal cells
    Title: NeuroD induces the expression of visinin and calretinin by proliferating cells derived from toxin-damaged chicken retina.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
visinin-like protein 1
Names
OZ1
VILIP

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205255.2 → NP_990586.1  visinin-like protein 1

    See identical proteins and their annotated locations for NP_990586.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000067
    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
    Related
    ENSGALP00010003212.1, ENSGALT00010005373.1
    Conserved Domains (1) summary
    COG5126
    Location:15 → 181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    99825981..99902932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025148557.3 → XP_025004325.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
    Conserved Domains (1) summary
    COG5126
    Location:15 → 181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  2. XM_046938526.1 → XP_046794482.1  visinin-like protein 1 isoform X4

  3. XM_015284953.4 → XP_015140439.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
    Conserved Domains (1) summary
    COG5126
    Location:15 → 181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  4. XM_025148558.3 → XP_025004326.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
    Conserved Domains (1) summary
    COG5126
    Location:15 → 181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  5. XM_025148560.3 → XP_025004328.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
    Conserved Domains (1) summary
    COG5126
    Location:15 → 181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  6. XM_015284955.4 → XP_015140441.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
    Conserved Domains (1) summary
    COG5126
    Location:15 → 181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  7. XM_046938524.1 → XP_046794480.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  8. XM_015284954.3 → XP_015140440.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
    Conserved Domains (1) summary
    COG5126
    Location:15 → 181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  9. XM_046938525.1 → XP_046794481.1  visinin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0X5A5, A0A8V0XC97
    Related
    ENSGALP00010003211.1, ENSGALT00010005372.1

  10. XM_015284952.4 → XP_015140438.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
    Related
    ENSGALP00010003209.1, ENSGALT00010005370.1
    Conserved Domains (1) summary
    COG5126
    Location:15 → 181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  11. XM_046938523.1 → XP_046794479.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  12. XM_046938521.1 → XP_046794477.1  visinin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XC97

  13. XM_015284956.4 → XP_015140442.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
    Conserved Domains (1) summary
    COG5126
    Location:15 → 181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  14. XM_046938522.1 → XP_046794478.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    99651820..99728735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046913215.1 → XP_046769171.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  2. XM_046913222.1 → XP_046769178.1  visinin-like protein 1 isoform X4

  3. XM_046913211.1 → XP_046769167.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  4. XM_046913214.1 → XP_046769170.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  5. XM_046913216.1 → XP_046769172.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  6. XM_046913212.1 → XP_046769168.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  7. XM_046913220.1 → XP_046769176.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  8. XM_046913218.1 → XP_046769174.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  9. XM_046913221.1 → XP_046769177.1  visinin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0X5A5, A0A8V0XC97

  10. XM_046913223.1 → XP_046769179.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  11. XM_046913219.1 → XP_046769175.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  12. XM_046913210.1 → XP_046769166.1  visinin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XC97

  13. XM_046913213.1 → XP_046769169.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97

  14. XM_046913217.1 → XP_046769173.1  visinin-like protein 1 isoform X2

    UniProtKB/Swiss-Prot
    P62764
    UniProtKB/TrEMBL
    A0A8V0XC97
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P62764.2 GenPept UniProtKB/Swiss-Prot:P62764

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