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GATA6 GATA binding protein 6 [ Gallus gallus (chicken) ]

Gene ID: 396390, updated on 3-Dec-2024

Summary

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Symbol
GATA6provided by CGNC
Full Name
GATA binding protein 6provided by CGNC
Primary source
CGNC:49785
See related
Ensembl:ENSGALG00010005127
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
GATA-6
Orthologs
human mouse all
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Genomic context

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See GATA6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (102256451..102278648)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (102320978..102343245)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110072 Neighboring gene uncharacterized LOC121110074 Neighboring gene uncharacterized LOC121110073 Neighboring gene uncharacterized LOC121111955 Neighboring gene uncharacterized LOC101751137 Neighboring gene RB binding protein 8, endonuclease Neighboring gene uncharacterized LOC107052000

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GATA-4/5/6, a subfamily of three transcription factors transcribed in developing heart and gut. Laverriere AC, et al. J Biol Chem, 1994 Sep 16. PMID 8083222
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in epithelial cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor GATA-6
Names
GATA-6 transcription factor
GATA-binding factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398234.1 → NP_001385163.1  transcription factor GATA-6 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000043
    UniProtKB/Swiss-Prot
    P43693

  2. NM_205420.2 → NP_990751.2  transcription factor GATA-6 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000043
    UniProtKB/Swiss-Prot
    P43693
    Related
    ENSGALP00010006732.1, ENSGALT00010012063.1

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    102256451..102278648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    102320978..102343245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046910483.1 → XP_046766439.1  transcription factor GATA-6 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XF20
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P43693.1 GenPept UniProtKB/Swiss-Prot:P43693

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.