SCARB1 scavenger receptor class B member 1 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: SCARB1provided by VGNC
Official Full Name: scavenger receptor class B member 1provided by VGNC
Primary source: VGNC:VGNC:92613
See related: Ensembl:ENSSSCG00000009759
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Annotation information: Annotation category: partial on reference assembly
Expression: Ubiquitous expression in subcutaneous adipose (RPKM 54.2), liver (RPKM 25.3) and 8 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 14

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	14	NC_010456.5 (28301421..28393568)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	14	NC_010456.4 (30050898..30093735)

Chromosome 14 - NC_010456.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Luteinization causes upregulation of SR-BI expression, its posttranslational maturation by glycosylation, and insertion into luteal cell membranes.
Title: Lipoprotein receptor expression during luteinization of the ovarian follicle.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

MARC_15397-15398:1053630188:1 (e-PCR)
- UniSTS:267834

MARC_31051-15398:1041619836:1 (e-PCR)
- UniSTS:269173

MARC_31551-31552:1045588255:1 (e-PCR)
- UniSTS:269188

MARC_20711-20712:1021407891:3 (e-PCR)
- UniSTS:268470

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables lipid binding	IEA Inferred from Electronic Annotation more info	PubMed
enables low-density lipoprotein particle binding	IEA Inferred from Electronic Annotation more info	PubMed
enables scavenger receptor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cholesterol efflux	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cholesterol import	IEA Inferred from Electronic Annotation more info	PubMed
involved_in plasma lipoprotein particle clearance	IEA Inferred from Electronic Annotation more info	PubMed
involved_in recognition of apoptotic cell	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in caveola	IEA Inferred from Electronic Annotation more info	PubMed
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: scavenger receptor class B member 1

Names: SR-BI; SRB1; high density lipoprotein receptor SR-BI

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.