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SsRbeta Signal sequence receptor beta [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39768, updated on 9-Dec-2024

Summary

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Official Symbol
SsRbetaprovided by FlyBase
Official Full Name
Signal sequence receptor betaprovided by FlyBase
Primary source
FLYBASE:FBgn0011016
Locus tag
Dmel_CG5474
See related
AllianceGenome:FB:FBgn0011016
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-EST:Liang-1.1; BcDNA.LD10457; BcDNA:LD10457; CG5474; clone 1.1; Dmel\CG5474; l(3)s1939
Summary
Located in endomembrane system. Is expressed in adult head; adult heart; and organism. Orthologous to human SSR2 (signal sequence receptor subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See SsRbeta in Genome Data Viewer
Location:
72D9-72D9; 3-44 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (16129617..16130983)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (16122717..16124083)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene TBP-associated factor 4 Neighboring gene Strumpellin Neighboring gene Phosphoglucose mutase 1 Neighboring gene TRAPP subunit 20 Neighboring gene enhanced level of genomic instability 1 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The early developmental gene Semaphorin 5c contributes to olfactory behavior in adult Drosophila. Rollmann SM, et al. Genetics, 2007 Jun. PMID 17435226, Free PMC Article
  2. Identification of ER proteins involved in the functional organisation of the early secretory pathway in Drosophila cells by a targeted RNAi screen. Kondylis V, et al. PLoS One, 2011 Feb 23. PMID 21383842, Free PMC Article
  3. Preservation of genes involved in sterol metabolism in cholesterol auxotrophs: facts and hypotheses. Vinci G, et al. PLoS One, 2008 Aug 6. PMID 18682733, Free PMC Article
  4. An Efficient Screen for Cell-Intrinsic Factors Identifies the Chaperonin CCT and Multiple Conserved Mechanisms as Mediating Dendrite Morphogenesis. Wang YH, et al. Front Cell Neurosci, 2020. PMID 33100975, Free PMC Article
  5. Discriminant analysis to evaluate clustering of gene expression data. Méndez MA, et al. FEBS Lett, 2002 Jul 3. PMID 12095613

See all (53) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
located_in endomembrane system HDA PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
signal sequence receptor beta
Names
CG5474-PA
SsRbeta-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    16129617..16130983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_079379.3 → NP_524103.2  signal sequence receptor beta [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_524103.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U9P9, Q9VUZ0
    Related
    FBpp0075209
    Conserved Domains (1) summary
    pfam05753
    Location:9 → 186
    TRAP_beta; Translocon-associated protein beta (TRAPB)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VUZ0 Q9VUZ0

Gene LinkOut

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