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Trs20 TRAPP subunit 20 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39769, updated on 9-Dec-2024

Summary

Official Symbol
Trs20provided by FlyBase
Official Full Name
TRAPP subunit 20provided by FlyBase
Primary source
FLYBASE:FBgn0266724
Locus tag
Dmel_CG5161
See related
AllianceGenome:FB:FBgn0266724
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RE62842; CG5161; Dmel\CG5161; E(smoDN)B-left; Group B-left; l(3)72Dh; TRAPP2C; TRAPPC2; Trs20p
Summary
Involved in dsRNA transport and spermatogenesis. Part of TRAPPII protein complex and TRAPPIII protein complex. Human ortholog(s) of this gene implicated in X-linked spondyloepiphyseal dysplasia tarda. Orthologous to human TRAPPC2 (trafficking protein particle complex subunit 2) and TRAPPC2B (trafficking protein particle complex subunit 2B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See Trs20 in Genome Data Viewer
Location:
72D9-72D9; 3-44 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (16131001..16131632, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (16124094..16124732, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Strumpellin Neighboring gene Phosphoglucose mutase 1 Neighboring gene Signal sequence receptor beta Neighboring gene enhanced level of genomic instability 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of TRAPP complex ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of TRAPPII protein complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of TRAPPIII protein complex IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
TRAPP subunit 20
Names
CG5161-PA
TRAPP subunit 20 ortholog
Trs20-PA
enhancer of smoDN group B-left
lethal (3) 72Dh

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    16131001..16131632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_140584.3NP_648841.1  TRAPP subunit 20 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648841.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8SYG9, Q9VUZ1
    UniProtKB/TrEMBL
    A0A1B2AK04
    Related
    FBpp0075246
    Conserved Domains (1) summary
    cd14825
    Location:3137
    TRAPPC2_sedlin; Trafficking protein particle complex subunit 2