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sdc1.L syndecan 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398348, updated on 4-Jan-2025

Summary

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Official Symbol
sdc1.L
Official Full Name
syndecan 1 L homeolog
Primary source
Xenbase:XB-GENE-6251594
Locus tag
XELAEV_18028097mg
See related
EnsemblRapid:ENSXLAG00005007709 AllianceGenome:Xenbase:XB-GENE-6251594
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
Syn1; sdc1; xSyn1; xsyn-1; syndecan1; XSyndecan-1
Summary
Predicted to be located in extracellular region and membrane. Is expressed in dermal system; ectoderm; and pharyngeal arch. Orthologous to human SDC1 (syndecan 1). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See sdc1.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (154550393..154597366, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (143485199..143532397, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene matrilin 3 L homeolog Neighboring gene lysosomal-associated protein transmembrane 4 alpha L homeolog Neighboring gene pumilio RNA binding family member 2 L homeolog Neighboring gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 15 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Embryonic expression patterns of Xenopus syndecans. Teel AL, et al. Mech Dev, 1996 Oct. PMID 8951790

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
syndecan-3
Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    154550393..154597366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264044.2 → XP_018119533.1  syndecan-3

    UniProtKB/TrEMBL
    A0A1L8GBM5, A0A974CYU6, O42472
    Related
    ENSXLAP00005021972.1, ENSXLAT00005022663.1
Nucleotide Protein Strain
Heading Accession and Version

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