otogl2.L otogelin L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: otogl2.L
Official Full Name: otogelin L homeolog
Primary source: Xenbase:XB-GENE-6256047
Locus tag: XELAEV_18036111mg
See related: EnsemblRapid:ENSXLAG00005025008 AllianceGenome:Xenbase:XB-GENE-6256047
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: otgn; otog; mlemp; xep-1; otogl2.S
Summary: Predicted to enable alpha-L-arabinofuranosidase activity. Predicted to act upstream of or within L-arabinose metabolic process; blood coagulation; and cell-substrate adhesion. Predicted to be located in extracellular matrix and extracellular space. Is expressed in dermal system and ectoderm. [provided by Alliance of Genome Resources, Dec 2024]
Annotation information: Annotation category: partial on reference assembly
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 7L

Exon count:: 76

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	7L	NC_054383.1 (118823644..118875801, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	7L	NC_030736.1 (108277338..108329640, complement)

Chromosome 7L - NC_054383.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables alpha-L-arabinofuranosidase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within L-arabinose metabolic process	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: otogelin L homeolog

Names: epidermal protein; otogelin-like 2 L homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089059.1 → NP_001082528.1 otogelin L homeolog precursor

See identical proteins and their annotated locations for NP_001082528.1

Status: PROVISIONAL

Source sequence(s)

BC076719

UniProtKB/TrEMBL

A0A974CGZ8, Q6DFL6

Related

ENSXLAP00005077059.1, ENSXLAT00005078651.1

Conserved Domains (7) summary

pfam00094
Location:383 → 531

VWD; von Willebrand factor type D domain

pfam01826
Location:742 → 801

TIL; Trypsin Inhibitor like cysteine rich domain

pfam08742
Location:1018 → 1087

C8; C8 domain

pfam16009
Location:152 → 327

DUF4779; Domain of unknown function (DUF4779)

pfam16228
Location:153 → 313

DUF4887; Domain of unknown function (DUF4887)

cl02516
Location:831 → 975

VWD; von Willebrand factor type D domain

cl21545
Location:2295 → 2377

GHB_like; Glycoprotein hormone beta chain homologues

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

118823644..118875801 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)