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upk1b.L uroplakin 1B L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398638, updated on 9-Dec-2024

Summary

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Official Symbol
upk1b.L
Official Full Name
uroplakin 1B L homeolog
Primary source
Xenbase:XB-GENE-17337290
Locus tag
XELAEV_18011316mg
See related
EnsemblRapid:ENSXLAG00005031352 AllianceGenome:Xenbase:XB-GENE-17337290
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
upib; upk1; tspan20
Summary
Predicted to be located in membrane. Orthologous to human UPK1B (uroplakin 1B). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See upk1b.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (5937243..5946043)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (5738331..5747092)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene limbic system associated membrane protein L homeolog Neighboring gene U2 spliceosomal RNA Neighboring gene immunoglobulin superfamily member 11 Neighboring gene Rho GTPase activating protein 31 L homeolog Neighboring gene beta-1,3-glucuronyltransferase 1 like L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC64589

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC398638; uroplakin-1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    5937243..5946043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018245829.2 → XP_018101318.1  uroplakin-1b isoform X2

    UniProtKB/TrEMBL
    A0A974DLM3, Q7SYP7, Q7ZYS3
    Related
    ENSXLAP00005093934.1, ENSXLAT00005095636.1

  2. XM_018245828.1 → XP_018101317.1  uroplakin-1b isoform X1

    UniProtKB/TrEMBL
    A0A1L8HCA9, A0A974DMF2, Q7ZYS3

  3. XM_018245830.2 → XP_018101319.1  uroplakin-1b isoform X2

    UniProtKB/TrEMBL
    A0A974DLM3, Q7SYP7, Q7ZYS3
    Related
    ENSXLAP00005094100.1, ENSXLAT00005095802.1
Nucleotide Protein Strain
Heading Accession and Version

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