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cnn1.S calponin S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398867, updated on 27-Dec-2024

Summary

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Official Symbol
cnn1.S
Official Full Name
calponin S homeolog
Primary source
Xenbase:XB-GENE-17346347
Locus tag
XELAEV_18000762mg
See related
EnsemblRapid:ENSXLAG00005010392 AllianceGenome:Xenbase:XB-GENE-17346347
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
clpH3; XclpH3
Summary
Predicted to enable actin binding activity and calmodulin binding activity. Predicted to act upstream of or within actomyosin structure organization. Orthologous to human CNN1 (calponin 1). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See cnn1.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (124540638..124556195)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694811.1 (988239..1003990)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121402279 Neighboring gene TLC domain containing 4, gene 2 S homeolog Neighboring gene elongation factor 1 S homeolog Neighboring gene acid phosphatase 5, tartrate resistant S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68737

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
  
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC398867

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089856.1 → NP_001083325.1  uncharacterized protein LOC398867

    See identical proteins and their annotated locations for NP_001083325.1

    Status: PREDICTED

    Source sequence(s)
    BC060387
    UniProtKB/TrEMBL
    Q6PAB2
    Related
    ENSXLAP00005030646.1, ENSXLAT00005031403.1
    Conserved Domains (3) summary
    COG5199
    Location:17 → 177
    SCP1; Calponin [Cytoskeleton]
    pfam00307
    Location:30 → 126
    CH; Calponin homology (CH) domain
    pfam00402
    Location:163 → 186
    Calponin; Calponin family repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    124540638..124556195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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