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MEX3D mex-3 RNA binding family member D [ Homo sapiens (human) ]

Gene ID: 399664, updated on 27-Nov-2024

Summary

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Official Symbol
MEX3Dprovided by HGNC
Official Full Name
mex-3 RNA binding family member Dprovided by HGNC
Primary source
HGNC:HGNC:16734
See related
Ensembl:ENSG00000181588 MIM:611009; AllianceGenome:HGNC:16734
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MEX3; TINO; RKHD1; MEX-3D; RNF193; OK/SW-cl.4
Summary
Enables mRNA 3'-UTR AU-rich region binding activity. Located in nucleus and perinuclear region of cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in testis (RPKM 6.0), fat (RPKM 4.9) and 24 other tissues See more
Orthologs
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Genomic context

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See MEX3D in Genome Data Viewer
Location:
19p13.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (1554672..1568325, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (1525487..1539144, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (1554671..1568324, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985337 Neighboring gene polo like kinase 5 (inactive) Neighboring gene CRISPRi-validated cis-regulatory element chr19.367 Neighboring gene MPRA-validated peak3222 silencer Neighboring gene Sharpr-MPRA regulatory region 1835 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9728 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9729 Neighboring gene RNA, 7SL, cytoplasmic 477, pseudogene Neighboring gene methyl-CpG binding domain protein 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:1584307-1584918 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:1584919-1585529 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:1590888-1591877 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9730 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9731 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9732

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. MEX3D is an oncogenic driver in prostate cancer. Shao L, et al. Prostate, 2021 Nov. PMID 34455614, Free PMC Article
  2. Dysregulated gene expressions of MEX3D, FOS and BCL2 in human induced-neuronal (iN) cells from NF1 patients: a pilot study. Sagata N, et al. Sci Rep, 2017 Oct 24. PMID 29066822, Free PMC Article
  3. Identification of TINO: a new evolutionarily conserved BCL-2 AU-rich element RNA-binding protein. Donnini M, et al. J Biol Chem, 2004 May 7. PMID 14769789
  4. Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies. Buchet-Poyau K, et al. Nucleic Acids Res, 2007. PMID 17267406, Free PMC Article
  5. Interaction with 14-3-3 adaptors regulates the sorting of hMex-3B RNA-binding protein to distinct classes of RNA granules. Courchet J, et al. J Biol Chem, 2008 Nov 14. PMID 18779327

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MEX3D is an oncogenic driver in prostate cancer.
    Title: MEX3D is an oncogenic driver in prostate cancer.
  2. Dysregulated gene expressions of MEX3D, FOS and BCL2 in human induced-neuronal (iN) cells from NF1 patients
    Title: Dysregulated gene expressions of MEX3D, FOS and BCL2 in human induced-neuronal (iN) cells from NF1 patients: a pilot study.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA2031

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
enables mRNA 3'-UTR AU-rich region binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA destabilization NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in mRNA localization resulting in post-transcriptional regulation of gene expression NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein MEX3D
Names
RING finger and KH domain-containing protein 1
RING finger protein 193
bcl-2 ARE RNA binding protein
ring finger (C3HC4 type) and KH domain containing 1
ring finger and KH domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001174118.2 → NP_001167589.1  RNA-binding protein MEX3D isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice pattern in the 3' coding region, compared to variant 1. The resulting isoform (2) has a longer and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AC005943, AF458084
    UniProtKB/Swiss-Prot
    Q86XN8
    Conserved Domains (3) summary
    smart00322
    Location:273 → 338
    KH; K homology RNA-binding domain
    cd00105
    Location:180 → 241
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam13920
    Location:598 → 645
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  2. NM_203304.4 → NP_976049.3  RNA-binding protein MEX3D isoform 1

    See identical proteins and their annotated locations for NP_976049.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the shorter isoform (1).
    Source sequence(s)
    AC005943, AC027307
    Consensus CDS
    CCDS32865.2
    UniProtKB/Swiss-Prot
    A0PJL8, A1L023, E9PAL6, Q71M49, Q86XN8
    Related
    ENSP00000384398.3, ENST00000402693.5
    Conserved Domains (3) summary
    smart00322
    Location:273 → 338
    KH; K homology RNA-binding domain
    cd00105
    Location:180 → 241
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam13920
    Location:598 → 645
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    1554672..1568325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    1525487..1539144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q86XN8.3 GenPept UniProtKB/Swiss-Prot:Q86XN8

Gene LinkOut

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