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TCP10L2 t-complex 10 like 2 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 401285, updated on 10-Dec-2024

Summary

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Official Symbol
TCP10L2provided by HGNC
Official Full Name
t-complex 10 like 2 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:21254
See related
AllianceGenome:HGNC:21254
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.5) See more
Orthologs
all
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Genomic context

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See TCP10L2 in Genome Data Viewer
Location:
6q27
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (167170619..167196751)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (168553298..168579422)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167576665-167577653 Neighboring gene G protein-coupled receptor 31 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:167578457-167579656 Neighboring gene uncharacterized LOC105378123 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167585168-167585668 Neighboring gene uncharacterized LOC124901462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167619037-167619536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167620021-167620522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167620523-167621022 Neighboring gene unc-93 homolog A (C. elegans) pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167621902-167622418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167622419-167622933 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25457 Neighboring gene Sharpr-MPRA regulatory region 9897 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167634809-167635426 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167635427-167636043 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167637543-167638321 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:167639317-167640118 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:167641232-167641764 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:167645493-167645631 Neighboring gene human pluripotency-associated transcript 5 Neighboring gene uncharacterized LOC102724220

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. Huttlin EL, et al. Cell, 2015 Jul 16. PMID 26186194, Free PMC Article
  2. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article
  3. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • T-complex 10-like protein 2
  • T-complex protein 10A homolog 2
  • putative t-complex protein 10A homolog 2
  • t-complex 10-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    167170619..167196751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059876.1 RNA Sequence

  2. XR_007059874.1 RNA Sequence

  3. XR_007059870.1 RNA Sequence

  4. XR_007059868.1 RNA Sequence

  5. XR_007059869.1 RNA Sequence

  6. XR_007059871.1 RNA Sequence

  7. XR_007059875.1 RNA Sequence

  8. XR_007059872.1 RNA Sequence

  9. XR_007059873.1 RNA Sequence

  10. XR_001743415.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    168553298..168579422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077317.1 RNA Sequence

  2. XR_007077313.1 RNA Sequence

  3. XR_007077308.1 RNA Sequence

  4. XR_007077307.1 RNA Sequence

  5. XR_007077309.1 RNA Sequence

  6. XR_007077315.1 RNA Sequence

  7. XR_007077316.1 RNA Sequence

  8. XR_007077310.1 RNA Sequence

  9. XR_007077311.1 RNA Sequence

  10. XR_007077312.1 RNA Sequence

  11. XR_007077314.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013683.1: Suppressed sequence

    Description
    NM_001013683.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate and currently there is not sufficient data to support this transcript.

  2. NM_001145121.2: Suppressed sequence

    Description
    NM_001145121.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
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