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CG11396 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40296, updated on 9-Dec-2024

Summary

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Official Symbol
CG11396provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0037022
Locus tag
Dmel_CG11396
See related
AllianceGenome:FB:FBgn0037022
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG11396; TRAPPC12
Summary
Predicted to be involved in Golgi vesicle transport. Located in Golgi apparatus. Part of TRAPPIII protein complex. Is expressed in adult head and organism. Orthologous to human TRAPPC12 (trafficking protein particle complex subunit 12). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG11396 in Genome Data Viewer
Location:
77E6-77E6; 3-47 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (20786340..20788137, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (20779440..20781237, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene pitslre Neighboring gene Peroxin 16 Neighboring gene Peroxin 14 Neighboring gene Phosphorylated CTD-interacting factor 1 Neighboring gene antisense RNA:CR46484 Neighboring gene Six4 Neighboring gene long non-coding RNA:CR43705

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cryo-EM structure of metazoan TRAPPIII, the multi-subunit complex that activates the GTPase Rab1. Galindo A, et al. EMBO J, 2021 Jun 15. PMID 34018214, Free PMC Article
  2. PINK1 and Parkin regulate IP(3)R-mediated ER calcium release. Ham SJ, et al. Nat Commun, 2023 Aug 25. PMID 37626046, Free PMC Article
  3. The two TRAPP complexes of metazoans have distinct roles and act on different Rab GTPases. Riedel F, et al. J Cell Biol, 2018 Feb 5. PMID 29273580, Free PMC Article
  4. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. Leung W, et al. G3 (Bethesda), 2015 Mar 4. PMID 25740935, Free PMC Article
  5. Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes. Hosono C, et al. Nat Cell Biol, 2015 Dec. PMID 26551273

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in Golgi vesicle transport IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of TRAPPIII protein complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
Names
CG11396-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    20786340..20788137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_140998.3 → NP_649255.1  uncharacterized protein Dmel_CG11396 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649255.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VPB6
    Related
    FBpp0077934
    Conserved Domains (3) summary
    sd00006
    Location:367 → 392
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:400 → 430
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:367 → 429
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VPB6 Q9VPB6

Gene LinkOut

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