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Or1f20 olfactory receptor family 1 subfamily F member 20 [ Rattus norvegicus (Norway rat) ]

Gene ID: 405335, updated on 4-Jan-2025

Summary

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Official Symbol
Or1f20provided by RGD
Official Full Name
olfactory receptor family 1 subfamily F member 20provided by RGD
Primary source
RGD:1332862
See related
EnsemblRapid:ENSRNOG00000074000 AllianceGenome:RGD:1332862
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
tpcr13; Olr1366
Summary
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Expression
Biased expression in Testes (RPKM 9.0), Thymus (RPKM 3.4) and 4 other tissues See more
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Genomic context

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See Or1f20 in Genome Data Viewer
Location:
10q12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (12585633..12643095, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (12090163..12138439, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (12465951..12477715, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480654 Neighboring gene olfactory receptor family 1 subfamily F member 21 Neighboring gene olfactory receptor family 1 subfamily F member 20B Neighboring gene olfactory receptor family 1 subfamily F member 22, pseudogene 1 Neighboring gene olfactory receptor family 1 subfamily F member 20E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Specific repertoire of olfactory receptor genes in the male germ cells of several mammalian species. Vanderhaeghen P, et al. Genomics, 1997 Feb 1. PMID 9119360
  2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, et al. Nature, 2004 Apr 1. PMID 15057822
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables olfactory receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of chemical stimulus involved in sensory perception of smell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
olfactory receptor Olr1366
Names
olfactory receptor 1366
olfactory receptor gene Olr1366

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001000980.1 → NP_001000980.1  olfactory receptor Olr1366

    See identical proteins and their annotated locations for NP_001000980.1

    Status: REVIEWED

    Source sequence(s)
    JAXUCZ010000010
    Conserved Domains (1) summary
    cd15918
    Location:34 → 295
    7tmA_OR1_7-like; olfactory receptor families 1, 7, and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    12585633..12643095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039086527.2 → XP_038942455.1  olfactory receptor Olr1366 isoform X2

  2. XM_039086525.2 → XP_038942453.1  olfactory receptor Olr1366 isoform X1

    Conserved Domains (1) summary
    cd15918
    Location:34 → 295
    7tmA_OR1_7-like; olfactory receptor families 1, 7, and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors

  3. XM_039086526.2 → XP_038942454.2  olfactory receptor Olr1366 isoform X1

  4. XM_039086524.2 → XP_038942452.1  olfactory receptor Olr1366 isoform X1

    Related
    ENSRNOP00000100585.1, ENSRNOT00000147219.1
    Conserved Domains (1) summary
    cd15918
    Location:34 → 295
    7tmA_OR1_7-like; olfactory receptor families 1, 7, and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors

  5. XM_063269561.1 → XP_063125631.1  olfactory receptor Olr1366 isoform X1

    Related
    ENSRNOP00000101295.1, ENSRNOT00000163473.1

RNA

  1. XR_010055220.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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