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CG1090 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40551, updated on 9-Dec-2024

Summary

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Official Symbol
CG1090provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0037238
Locus tag
Dmel_CG1090
See related
AllianceGenome:FB:FBgn0037238
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG1090
Summary
Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion transmembrane transport; intracellular calcium ion homeostasis; and sodium ion transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in adult head. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG1090 in Genome Data Viewer
Location:
82A4-82A4; 3-47.1 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (4359883..4366855)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (185605..192577)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene huckebein Neighboring gene long non-coding RNA:CR44922 Neighboring gene Sideroflexin 1/3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Processing of horizontal optic flow in three visual interneurons of the Drosophila brain. Schnell B, et al. J Neurophysiol, 2010 Mar. PMID 20089816
  2. A novel post-developmental role of the Hox genes underlies normal adult behavior. Raouf Issa A, et al. Proc Natl Acad Sci U S A, 2022 Dec 6. PMID 36454751, Free PMC Article
  3. 5-Hydroxymethylation-associated epigenetic modifiers of Alzheimer's disease modulate Tau-induced neurotoxicity. Bernstein AI, et al. Hum Mol Genet, 2016 Jun 15. PMID 27060332, Free PMC Article
  4. Pleiotropic fitness effects of the Tre1-Gr5a region in Drosophila melanogaster. Rollmann SM, et al. Nat Genet, 2006 Jul. PMID 16783380
  5. RNA editing in Drosophila melanogaster: New targets and functional consequences. Stapleton M, et al. RNA, 2006 Nov. PMID 17018572, Free PMC Article

See all (36) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

mobile_element

  • Loc: 4362022-4362390 mobile_element_type = transposon:INE-1{}3676

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables calcium channel activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calcium, potassium:sodium antiporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calcium, potassium:sodium antiporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in calcium ion transport ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in intracellular calcium ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sodium ion transport ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG1090-PE
CG1090-PG
CG1090-PH
CG1090-PI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    4359883..4366855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001275323.1 → NP_001262252.1  uncharacterized protein Dmel_CG1090, isoform I [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262252.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8IPM4, Q8SXA2, Q9VN12
    UniProtKB/TrEMBL
    A0A0B4KGG6
    Conserved Domains (2) summary
    TIGR00367
    Location:116 → 609
    TIGR00367; K+-dependent Na+/Ca+ exchanger related-protein
    pfam01699
    Location:463 → 615
    Na_Ca_ex; Sodium/calcium exchanger protein

  2. NM_001275322.1 → NP_001262251.1  uncharacterized protein Dmel_CG1090, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262251.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KFJ3
    Conserved Domains (1) summary
    TIGR00927
    Location:75 → 140
    2A1904; K+-dependent Na+/Ca+ exchanger

  3. NM_141202.4 → NP_649459.4  uncharacterized protein Dmel_CG1090, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649459.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8IPM4, Q8SXA2, Q9VN12
    UniProtKB/TrEMBL
    A0A0B4KGG6
    Conserved Domains (2) summary
    TIGR00367
    Location:116 → 609
    TIGR00367; K+-dependent Na+/Ca+ exchanger related-protein
    pfam01699
    Location:463 → 615
    Na_Ca_ex; Sodium/calcium exchanger protein

  4. NM_164343.2 → NP_730819.2  uncharacterized protein Dmel_CG1090, isoform H [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_730819.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8IPM4, Q8SXA2, Q9VN12
    UniProtKB/TrEMBL
    A0A0B4KGG6
    Conserved Domains (2) summary
    TIGR00367
    Location:116 → 609
    TIGR00367; K+-dependent Na+/Ca+ exchanger related-protein
    pfam01699
    Location:463 → 615
    Na_Ca_ex; Sodium/calcium exchanger protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4KFJ3 A0A0B4KFJ3
A0A0B4KGG6 A0A0B4KGG6
Q9VN12.4 Q9VN12

Gene LinkOut

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