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ydbJ DUF333 domain-containing protein YdbJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 4056027, updated on 3-Dec-2024

Summary

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Official Symbol
ydbJ
Official Full Name
DUF333 domain-containing protein YdbJ
Primary source
ECOCYC:G0-10450
Locus tag
b4529
See related
ASAP:ABE-0285050
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1375
Summary
First 16 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG13182].
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Genomic context

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Sequence:
NC_000913.3 (1441058..1441324)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene putative pyruvate-flavodoxin oxidoreductase Neighboring gene lipoprotein implicated in Novobiocin resistance Neighboring gene D-lactate dehydrogenase Neighboring gene putative phospholipid transport factor YdbH Neighboring gene lipoprotein YnbE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
  2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
DUF333 domain-containing protein YdbJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1441058..1441324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_588453.1 DUF333 domain-containing protein YdbJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for YP_588453.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0ACW2
    Conserved Domains (1) summary
    COG3042
    Location:11 → 88
    Hlx; Putative hemolysin [General function prediction only]
Nucleotide Protein
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