U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CG1116 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40622, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
CG1116provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0037297
Locus tag
Dmel_CG1116
See related
AllianceGenome:FB:FBgn0037297
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-WO0118547.337; cg1116; Dmel\CG1116; Rgp1
Summary
Predicted to enable small GTPase binding activity. Predicted to be involved in retrograde transport, endosome to Golgi. Located in Golgi apparatus. Is expressed in organism. Orthologous to human RGP1 (RGP1 homolog, RAB6A GEF complex partner 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CG1116 in Genome Data Viewer
Location:
82F6-82F6; 3-47.5 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (5219657..5221548)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (1045379..1047270)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene canoe Neighboring gene small nuclear RNA U4atac Neighboring gene Proteasome beta2 subunit-related 2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Enhanced chromatin accessibility of the dosage compensated Drosophila male X-chromosome requires the CLAMP zinc finger protein. Urban J, et al. PLoS One, 2017. PMID 29077765, Free PMC Article
  2. Rich regulates target specificity of photoreceptor cells and N-cadherin trafficking in the Drosophila visual system via Rab6. Tong C, et al. Neuron, 2011 Aug 11. PMID 21835342, Free PMC Article
  3. Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki). Sturgill D, et al. BMC Bioinformatics, 2013 Nov 9. PMID 24209455, Free PMC Article
  4. The two TRAPP complexes of metazoans have distinct roles and act on different Rab GTPases. Riedel F, et al. J Cell Biol, 2018 Feb 5. PMID 29273580, Free PMC Article
  5. Genomic analysis of heat-shock factor targets in Drosophila. Birch-Machin I, et al. Genome Biol, 2005. PMID 15998452, Free PMC Article

See all (30) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables small GTPase binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retrograde transport, endosome to Golgi ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Ric1-Rgp1 guanyl-nucleotide exchange factor complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein
Names
CG1116-PA
CG1116-PB
CG1116-PD

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    5219657..5221548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_169028.3 → NP_730895.1  uncharacterized protein Dmel_CG1116, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_730895.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IPP2
    Related
    FBpp0078421
    Conserved Domains (1) summary
    pfam08737
    Location:18 → 305
    Rgp1; Rgp1

  2. NM_169027.3 → NP_730894.2  uncharacterized protein Dmel_CG1116, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_730894.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0C4DHA5
    Conserved Domains (1) summary
    pfam08737
    Location:101 → 388
    Rgp1; Rgp1

  3. NM_141259.3 → NP_649516.1  uncharacterized protein Dmel_CG1116, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649516.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VN84, Q9VN85
    Related
    FBpp0078422
    Conserved Domains (1) summary
    pfam08737
    Location:100 → 387
    Rgp1; Rgp1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0C4DHA5 A0A0C4DHA5
Q8IPP2 Q8IPP2
Q9VN84 Q9VN84

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools
Miscellaneous