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zgc:55943 zgc:55943 [ Danio rerio (zebrafish) ]

Gene ID: 406337, updated on 4-Jan-2025

Summary

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Official Symbol
zgc:55943provided by ZNC
Official Full Name
zgc:55943provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2013
See related
Ensembl:ENSDARG00000029292 AllianceGenome:ZFIN:ZDB-GENE-040426-2013
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:86868; wu:fd60c05
Summary
Orthologous to human C1orf21 (chromosome 1 open reading frame 21). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See zgc:55943 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (9957914..9971728, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (10160094..10173908, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene acyl-CoA binding domain containing 5b Neighboring gene TSEN15 tRNA splicing endonuclease subunit Neighboring gene SEC22 homolog B, vesicle trafficking protein a Neighboring gene IMP U3 small nucleolar ribonucleoprotein 3 Neighboring gene solute carrier family 35 member A3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC86868

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC406337

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291356.1 → NP_001278285.1  uncharacterized protein LOC406337 isoform 1

    See identical proteins and their annotated locations for NP_001278285.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    CR956623, EH435020
    UniProtKB/TrEMBL
    A0A8M1P0M6, Q6AZ99
    Related
    ENSDARP00000122697.1, ENSDART00000131613.3
    Conserved Domains (1) summary
    pfam15389
    Location:2 → 110
    DUF4612; Domain of unknown function (DUF4612)

  2. NM_213064.2 → NP_998229.1  uncharacterized protein LOC406337 isoform 2

    See identical proteins and their annotated locations for NP_998229.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1.
    Source sequence(s)
    CR956623
    UniProtKB/TrEMBL
    A0A8M1PG97, Q803B6
    Related
    ENSDARP00000048654.6, ENSDART00000048655.8
    Conserved Domains (1) summary
    pfam15389
    Location:2 → 99
    DUF4612; Domain of unknown function (DUF4612)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    9957914..9971728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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