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slc35e1 solute carrier family 35 member E1 [ Danio rerio (zebrafish) ]

Gene ID: 406347, updated on 4-Jan-2025

Summary

Official Symbol
slc35e1provided by ZNC
Official Full Name
solute carrier family 35 member E1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2033
See related
Ensembl:ENSDARG00000011945 AllianceGenome:ZFIN:ZDB-GENE-040426-2033
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc05g11; fc55b08; zgc:55838; wu:fc05g11; wu:fc55b08
Summary
Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E1 (solute carrier family 35 member E1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See slc35e1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (5499614..5512719)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (5553308..5566413)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type Ga Neighboring gene uncharacterized LOC137496665 Neighboring gene small Cajal body-specific RNA 11 Neighboring gene si:ch73-40i7.2 Neighboring gene CSE1 chromosome segregation 1-like (yeast) Neighboring gene peroxisomal biogenesis factor 11 gamma

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables antiporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
solute carrier family 35 member E1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213074.1NP_998239.1  solute carrier family 35 member E1

    See identical proteins and their annotated locations for NP_998239.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046896
    UniProtKB/TrEMBL
    A0A8M1PIP2, Q802Y0
    Related
    ENSDARP00000013733.6, ENSDART00000027850.8
    Conserved Domains (3) summary
    pfam00892
    Location:158303
    EamA; EamA-like transporter family
    pfam03151
    Location:14303
    TPT; Triose-phosphate Transporter family
    cl23754
    Location:32151
    EamA; EamA-like transporter family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    5499614..5512719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)