zgc:66443 zgc:66443 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:66443provided by ZNC
Official Full Name: zgc:66443provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2945
See related: Ensembl:ENSDARG00000057707 AllianceGenome:ZFIN:ZDB-GENE-040426-2945
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc67d02; fj98h11; wu:fc67d02; wu:fj98h11
Summary: Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 3

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (15670122..15679032, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (15520322..15529232, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in anatomical structure morphogenesis	IEA Inferred from Electronic Annotation more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC406856

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213535.1 → NP_998700.1 uncharacterized protein LOC406856

See identical proteins and their annotated locations for NP_998700.1

Status: PREDICTED

Source sequence(s)

BC054706

UniProtKB/TrEMBL

Q7SYJ2

Related

ENSDARP00000074890.4, ENSDART00000080441.5

Conserved Domains (4) summary

COG5048
Location:229 → 315

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:232 → 252

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:256 → 278

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:270 → 295

zf-H2C2_2; Zinc-finger double domain