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ST6GALNAC5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [ Gallus gallus (chicken) ]

Gene ID: 407778, updated on 3-Dec-2024

Summary

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Symbol
ST6GALNAC5provided by CGNC
Full Name
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5provided by CGNC
Primary source
CGNC:6857
See related
Ensembl:ENSGALG00010022471
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SIAT7E
Orthologs
human mouse all
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Genomic context

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See ST6GALNAC5 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (18941658..19059412, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (18949288..19067087, complement)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene adenylate kinase 5 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class K Neighboring gene uncharacterized LOC112532894 Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 Neighboring gene PIF1 5'-to-3' DNA helicase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene discovery in the embryonic chick retina. Hackam AS, et al. Mol Vis, 2003 Jun 20. PMID 12819621
  2. The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach. Harduin-Lepers A, et al. Glycobiology, 2005 Aug. PMID 15843597
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
Names
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
alpha-2,6-sialyltransferase ST6GalNAc V
sialyltransferase 7E
NP_001264423.1
XP_025008541.2
XP_025008542.2
XP_025008543.1
XP_025008545.2
XP_046778398.1
XP_046778399.1
XP_046778400.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277494.2 → NP_001264423.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5

    See identical proteins and their annotated locations for NP_001264423.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000239
    UniProtKB/TrEMBL
    F6VMN5, Q6ZXY4
    Related
    ENSGALP00010033031.1, ENSGALT00010054669.1
    Conserved Domains (1) summary
    pfam00777
    Location:101 → 299
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    18941658..19059412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025152777.2 → XP_025008545.2  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X4

  2. XM_025152775.2 → XP_025008543.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X3

    UniProtKB/TrEMBL
    Q6ZXY4
    Conserved Domains (1) summary
    pfam00777
    Location:107 → 301
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_025152773.2 → XP_025008541.2  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZNJ4

  4. XM_025152774.3 → XP_025008542.2  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZNJ4

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    18949288..19067087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046922444.1 → XP_046778400.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X3

    UniProtKB/TrEMBL
    Q6ZXY4

  2. XM_046922442.1 → XP_046778398.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZNJ4

  3. XM_046922443.1 → XP_046778399.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZNJ4
Nucleotide Protein Strain
Heading Accession and Version

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