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MAP1LC3B microtubule associated protein 1 light chain 3 beta [ Bos taurus (domestic cattle) ]

Gene ID: 408001, updated on 1-Jan-2025

Summary

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Gene symbol
MAP1LC3B
Gene description
microtubule associated protein 1 light chain 3 beta
See related
BGD:BT25974; Ensembl:ENSBTAG00000011632
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See MAP1LC3B in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (12973367..12986925)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene F-box protein 31 Neighboring gene uncharacterized LOC100848507 Neighboring gene zinc finger CCHC-type containing 14 Neighboring gene junctophilin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. Insertion of a sequence encoding light chain 3 of microtubule-associated proteins 1A and 1B in a pestivirus genome: connection with virus cytopathogenicity and induction of lethal disease in cattle. Meyers G, et al. J Virol, 1998 May. PMID 9557703, Free PMC Article
  2. Processing of a pestivirus protein by a cellular protease specific for light chain 3 of microtubule-associated proteins. Fricke J, et al. J Virol, 2004 Jun. PMID 15140988, Free PMC Article
  3. Molecular characterization of light chain 3. A microtubule binding subunit of MAP1A and MAP1B. Mann SS, et al. J Biol Chem, 1994 Apr 15. PMID 7908909
  4. LC3 conjugation system in mammalian autophagy. Tanida I, et al. Int J Biochem Cell Biol, 2004 Dec. PMID 15325588, Free PMC Article
  5. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microtubule-associated proteins 1A/1B light chain 3B
Names
MAP1 light chain 3-like protein 2
MAP1A/1B light chain 3 B
MAP1A/MAP1B LC3 B
MAP1A/MAP1B light chain 3 B
autophagy-related protein LC3 B
autophagy-related ubiquitin-like modifier LC3 B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001169.1 → NP_001001169.1  microtubule-associated proteins 1A/1B light chain 3B

    See identical proteins and their annotated locations for NP_001001169.1

    Status: PROVISIONAL

    Source sequence(s)
    AY570553
    UniProtKB/Swiss-Prot
    O41515, Q6PZ01
    UniProtKB/TrEMBL
    A0AAA9TDA5
    Related
    ENSBTAP00000015449.5, ENSBTAT00000015449.6
    Conserved Domains (1) summary
    cd17235
    Location:5 → 119
    Ubl_ATG8_MAP1LC3B; ubiquitin-like (Ubl) domain found in microtubule associate protein 1 light chain 3B (MAP1LC3B)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    12973367..12986925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024977975.2 → XP_024833743.1  microtubule-associated proteins 1A/1B light chain 3B isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O41515.4 GenPept UniProtKB/Swiss-Prot:O41515

Gene LinkOut

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