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CG9630 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40974, updated on 4-Jan-2025

Summary

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Official Symbol
CG9630provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0037561
Locus tag
Dmel_CG9630
See related
AllianceGenome:FB:FBgn0037561
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
cg9630; DDX55; Dmel\CG9630; DmRH16
Summary
Predicted to enable RNA helicase activity. Predicted to be active in nucleolus. Is expressed in several structures, including anterior endoderm; dorsal pharyngeal muscle cell; dorsal pharyngeal muscle primordium; embryonic/larval midgut primordium; and gut section. Orthologous to human DDX55 (DEAD-box helicase 55). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG9630 in Genome Data Viewer
Location:
84F6-84F6; 3-48 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (8267943..8269896, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (4093665..4095618, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Replication protein A1 Neighboring gene Minichromosome maintenance 2 Neighboring gene atonal Neighboring gene long non-coding RNA:CR44318

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DDX56 Binds to Chikungunya Virus RNA To Control Infection. Taschuk F, et al. mBio, 2020 Oct 27. PMID 33109765, Free PMC Article
  2. Stem-loop recognition by DDX17 facilitates miRNA processing and antiviral defense. Moy RH, et al. Cell, 2014 Aug 14. PMID 25126784, Free PMC Article
  3. Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosophila. Boudet N, et al. Genome Res, 2001 Dec. PMID 11731501, Free PMC Article
  4. RNA silencing in the antiviral innate immune defence--role of DEAD-box RNA helicases. Ulvila J, et al. Scand J Immunol, 2010 Mar. PMID 20415780
  5. Systematic analysis of the visual projection neurons of Drosophila melanogaster. I. Lobula-specific pathways. Otsuna H, et al. J Comp Neurol, 2006 Aug 20. PMID 16802334

See all (34) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG9630-PA
NP_649777.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    8267943..8269896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_141520.3 → NP_649777.1  uncharacterized protein Dmel_CG9630 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649777.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9VHU1
    Related
    FBpp0081355
    Conserved Domains (4) summary
    smart00487
    Location:22 → 232
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:239 → 370
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:6 → 226
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam13959
    Location:411 → 470
    DUF4217; Domain of unknown function (DUF4217)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VHU1.1 Q9VHU1

Gene LinkOut

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