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CDHR1 cadherin related family member 1 [ Gallus gallus (chicken) ]

Gene ID: 414847, updated on 3-Dec-2024

Summary

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Symbol
CDHR1provided by CGNC
Full Name
cadherin related family member 1provided by CGNC
Primary source
CGNC:1650
See related
Ensembl:ENSGALG00010010919
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
prCAD; PCDH21
Orthologs
human mouse all
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Genomic context

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See CDHR1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (3739523..3792037, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (3611561..3663965, complement)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 1 Neighboring gene retinal G protein coupled receptor Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 2 Neighboring gene uncharacterized LOC124418072 Neighboring gene growth hormone inducible transmembrane protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A photoreceptor-specific cadherin is essential for the structural integrity of the outer segment and for photoreceptor survival. Rattner A, et al. Neuron, 2001 Dec 6. PMID 11738025
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-related family member 1
Names
photoreceptor cadherin
protocadherin-21

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001759.2 → NP_001001759.1  cadherin-related family member 1 precursor

    See identical proteins and their annotated locations for NP_001001759.1

    Status: VALIDATED

    Source sequence(s)
    AF426394, JAENSK010000227
    UniProtKB/Swiss-Prot
    Q8UVJ7
    UniProtKB/TrEMBL
    A0A8V0YFI7
    Related
    ENSGALP00010014761.1, ENSGALT00010026137.1
    Conserved Domains (1) summary
    cd11304
    Location:141 → 244
    Cadherin_repeat; Cadherin tandem repeat domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3739523..3792037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046942776.1 → XP_046798732.1  cadherin-related family member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y759, A0A8V0Y8N6
    Related
    ENSGALP00010014790.1, ENSGALT00010026166.1

  2. XM_046942773.1 → XP_046798729.1  cadherin-related family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y2F1, A0A8V0YFI7
    Related
    ENSGALP00010014786.1, ENSGALT00010026162.1

  3. XM_046942777.1 → XP_046798733.1  cadherin-related family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Y8N6, A0A8V0YFK1
    Related
    ENSGALP00010014777.1, ENSGALT00010026153.1

  4. XM_046942775.1 → XP_046798731.1  cadherin-related family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y8P1, A0A8V0YFI7
    Related
    ENSGALP00010014773.1, ENSGALT00010026150.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3611561..3663965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046919968.1 → XP_046775924.1  cadherin-related family member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y8N6

  2. XM_046919966.1 → XP_046775922.1  cadherin-related family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YFI7

  3. XM_046919965.1 → XP_046775921.1  cadherin-related family member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y750

  4. XM_046919969.1 → XP_046775925.1  cadherin-related family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Y8N6

  5. XM_046919967.1 → XP_046775923.1  cadherin-related family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YFI7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8UVJ7.1 GenPept UniProtKB/Swiss-Prot:Q8UVJ7

Gene LinkOut

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