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CG5641 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41529, updated on 9-Dec-2024

Summary

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Official Symbol
CG5641provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0038046
Locus tag
Dmel_CG5641
See related
AllianceGenome:FB:FBgn0038046
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG5641
Summary
Predicted to enable DNA binding activity and double-stranded RNA binding activity. Predicted to be involved in positive regulation of DNA-templated transcription. Part of catalytic step 2 spliceosome and precatalytic spliceosome. Is expressed in several structures, including embryonic/larval midgut primordium; ganglia; larval muscle cell; mesoderm; and sensory nervous system primordium. Orthologous to human ILF2 (interleukin enhancer binding factor 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG5641 in Genome Data Viewer
Location:
87B10-87B10; 3-52 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (12427795..12429282, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (8253517..8255004, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Protein phosphatase 1 at 87B Neighboring gene N-acetylneuraminic acid synthase Neighboring gene uncharacterized protein Neighboring gene Proteasome alpha2 subunit Neighboring gene Activator of SUMO 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The nucleotide changes governing cuticular hydrocarbon variation and their evolution in Drosophila melanogaster. Takahashi A, et al. Proc Natl Acad Sci U S A, 2001 Mar 27. PMID 11259658, Free PMC Article
  2. Diurnal protein oscillation profiles in Drosophila head. Du J, et al. FEBS Lett, 2018 Nov. PMID 30311939, Free PMC Article
  3. The zinc finger protein Zn72D and DEAD box helicase Belle interact and control maleless mRNA and protein levels. Worringer KA, et al. BMC Mol Biol, 2009 Apr 22. PMID 19386123, Free PMC Article
  4. Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation. application to the insulin signaling pathway in Drosophila melanogaster S2 cells. Bridon G, et al. J Proteome Res, 2012 Feb 3. PMID 22059388
  5. Proteins rather than mRNAs regulate nucleation and persistence of Oskar germ granules in Drosophila. Curnutte HA, et al. Cell Rep, 2023 Jul 25. PMID 37384531, Free PMC Article

See all (42) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables double-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables double-stranded RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IC
Inferred by Curator
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome HDA PubMed 
located_in nucleolus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of precatalytic spliceosome HDA PubMed 

General protein information

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Preferred Names
uncharacterized protein
Names
CG5641-PA
interleukin enhancer binding factor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    12427795..12429282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_141939.4 → NP_650196.1  uncharacterized protein Dmel_CG5641 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650196.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9VG73
    Related
    FBpp0082066
    Conserved Domains (1) summary
    pfam07528
    Location:105 → 345
    DZF; DZF domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VG73.1 Q9VG73

Gene LinkOut

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