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trus toys are us [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41540, updated on 9-Dec-2024

Summary

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Official Symbol
trusprovided by FlyBase
Official Full Name
toys are usprovided by FlyBase
Primary source
FLYBASE:FBgn0038055
Locus tag
Dmel_CG5333
See related
AllianceGenome:FB:FBgn0038055
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG5333; Dmel\CG5333
Summary
Predicted to be involved in apoptotic process. Predicted to be located in cytoplasm. Orthologous to human PDCD2L (programmed cell death 2 like). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See trus in Genome Data Viewer
Location:
87B11-87B11; 3-52 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (12456573..12458444)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (8282295..8284166)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene versager Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene RNA polymerase III subunit C Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Programmed Cell Death 2-Like (Pdcd2l) Is Required for Mouse Embryonic Development. Houston BJ, et al. G3 (Bethesda), 2020 Dec 3. PMID 33055224, Free PMC Article
  2. Inference of positive and negative selection on the 5' regulatory regions of Drosophila genes. Kohn MH, et al. Mol Biol Evol, 2004 Feb. PMID 14660692
  3. Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis. Dottorini T, et al. BMC Bioinformatics, 2011 Jan 26. PMID 21269436, Free PMC Article
  4. Functional genomic analysis of the periodic transcriptome in the developing Drosophila wing. Liang L, et al. Dev Cell, 2014 Apr 14. PMID 24684830
  5. Identification of pathways regulating cell size and cell-cycle progression by RNAi. Björklund M, et al. Nature, 2006 Feb 23. PMID 16496002

See all (30) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in apoptotic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
toys are us
Names
CG5333-PA
trus-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    12456573..12458444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_141948.3 → NP_650205.1  toys are us [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650205.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q29R43, Q9VG62
    Related
    FBpp0082103
    Conserved Domains (1) summary
    pfam04194
    Location:371 → 482
    PDCD2_C; Programmed cell death protein 2, C-terminal putative domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VG62 Q9VG62

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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