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KATNB1 katanin regulatory subunit B1 [ Gallus gallus (chicken) ]

Gene ID: 415631, updated on 3-Dec-2024

Summary

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Symbol
KATNB1provided by CGNC
Full Name
katanin regulatory subunit B1provided by CGNC
Primary source
CGNC:704
See related
Ensembl:ENSGALG00010021570
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See KATNB1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (476456..493852, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (607010..624413, complement)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 319 Neighboring gene cyclic nucleotide gated channel subunit beta 1 Neighboring gene kinesin family member C2 Neighboring gene uncharacterized LOC121106573 Neighboring gene dynein regulatory complex subunit 7 Neighboring gene uromodulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule depolymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule severing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of katanin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
katanin p80 WD40 repeat-containing subunit B1
Names
katanin p80 (WD repeat containing) subunit B 1
katanin p80 WD40-containing subunit B1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030559.3 → NP_001025730.2  katanin p80 WD40 repeat-containing subunit B1

    See identical proteins and their annotated locations for NP_001025730.2

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000247
    UniProtKB/Swiss-Prot
    Q204L7, Q5ZIU8
    UniProtKB/TrEMBL
    A0A8V0ZRC0
    Related
    ENSGALP00010031316.1, ENSGALT00010052402.1
    Conserved Domains (4) summary
    COG2319
    Location:6 → 263
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam13925
    Location:499 → 650
    Katanin_con80; con80 domain of Katanin
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    476456..493852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015292293.4 → XP_015147779.1  katanin p80 WD40 repeat-containing subunit B1 isoform X2

    UniProtKB/Swiss-Prot
    Q204L7, Q5ZIU8
    UniProtKB/TrEMBL
    A0A8V0ZRC0
    Related
    ENSGALP00010031321.1, ENSGALT00010052410.1
    Conserved Domains (4) summary
    COG2319
    Location:6 → 263
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam13925
    Location:499 → 650
    Katanin_con80; con80 domain of Katanin
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]

  2. XM_040707028.2 → XP_040562962.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZRC0
    Conserved Domains (3) summary
    COG3147
    Location:387 → 496
    DedD; Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning]
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]

  3. XM_040707027.2 → XP_040562961.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZRC0
    Conserved Domains (3) summary
    COG3147
    Location:387 → 496
    DedD; Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning]
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    607010..624413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046925395.1 → XP_046781351.1  katanin p80 WD40 repeat-containing subunit B1 isoform X2

    UniProtKB/Swiss-Prot
    Q204L7, Q5ZIU8
    UniProtKB/TrEMBL
    A0A8V0ZRC0

  2. XM_046925394.1 → XP_046781350.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZRC0

  3. XM_046925393.1 → XP_046781349.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZRC0
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZIU8.2 GenPept UniProtKB/Swiss-Prot:Q5ZIU8

Gene LinkOut

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Molecular Biology Databases
Research Materials