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LRP3 LDL receptor related protein 3 [ Gallus gallus (chicken) ]

Gene ID: 415773, updated on 17-Aug-2024

Summary

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Symbol
LRP3provided by CGNC
Full Name
LDL receptor related protein 3provided by CGNC
Primary source
CGNC:3603
See related
Ensembl:ENSGALG00010024977
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See LRP3 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (9703138..9728500)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (10045997..10072811)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106550 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene WD repeat domain 88 Neighboring gene uncharacterized LOC107054294 Neighboring gene solute carrier family 7 member 10 Neighboring gene uncharacterized LOC107054293 Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
low-density lipoprotein receptor-related protein 3
Names
low density lipoprotein receptor-related protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9703138..9728500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015292474.4 → XP_015147960.1  low-density lipoprotein receptor-related protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZVZ5
    Related
    ENSGALP00010037740.1, ENSGALT00010060999.1
    Conserved Domains (2) summary
    cd00041
    Location:41 → 152
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00112
    Location:162 → 196
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  2. XM_040707292.2 → XP_040563226.1  low-density lipoprotein receptor-related protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A3G9
    Related
    ENSGALP00010037739.1, ENSGALT00010060998.1
    Conserved Domains (2) summary
    cd00041
    Location:19 → 130
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00112
    Location:140 → 174
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    10045997..10072811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040681267.2 → XP_040537201.1  low-density lipoprotein receptor-related protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8V1A3G9, A0A8V1A8Q1
    Conserved Domains (2) summary
    cd00041
    Location:34 → 145
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00112
    Location:155 → 189
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  2. XM_040681266.2 → XP_040537200.1  low-density lipoprotein receptor-related protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZVZ5
    Conserved Domains (2) summary
    cd00041
    Location:41 → 152
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00112
    Location:162 → 196
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  3. XM_040681268.2 → XP_040537202.1  low-density lipoprotein receptor-related protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A3G9
    Conserved Domains (2) summary
    cd00041
    Location:19 → 130
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00112
    Location:140 → 174
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
Nucleotide Protein
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