U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RBM6 RNA binding motif protein 6 [ Gallus gallus (chicken) ]

Gene ID: 415931, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
RBM6provided by CGNC
Full Name
RNA binding motif protein 6provided by CGNC
Primary source
CGNC:2124
See related
Ensembl:ENSGALG00010027327
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RBM6 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
24
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (2759412..2813704)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (2776764..2831063)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-12220 Neighboring gene macrophage stimulating 1 receptor Neighboring gene MON1 homolog A, secretory trafficking associated Neighboring gene semaphorin 3D Neighboring gene RAD54-like 2 (S. cerevisiae)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
RNA-binding protein 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030588.3 → NP_001025759.3  RNA-binding protein 6

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000251
    UniProtKB/TrEMBL
    A0A8V1A3R0
    Related
    ENSGALP00010040520.1, ENSGALT00010066254.1
    Conserved Domains (3) summary
    smart00443
    Location:1107 → 1150
    G_patch; glycine rich nucleic binding domain
    smart00360
    Location:479 → 552
    RRM; RNA recognition motif
    cd16163
    Location:805 → 853
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2759412..2813704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040646187.2 → XP_040502121.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2
    Conserved Domains (4) summary
    smart00443
    Location:1108 → 1151
    G_patch; glycine rich nucleic binding domain
    cd16163
    Location:806 → 854
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
    cd12314
    Location:477 → 554
    RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
    cd12563
    Location:691 → 777
    RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

  2. XM_040646183.2 → XP_040502117.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2
    Conserved Domains (4) summary
    smart00443
    Location:1108 → 1151
    G_patch; glycine rich nucleic binding domain
    cd16163
    Location:806 → 854
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
    cd12314
    Location:477 → 554
    RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
    cd12563
    Location:691 → 777
    RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

  3. XM_015292822.4 → XP_015148308.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2
    Conserved Domains (4) summary
    smart00443
    Location:1108 → 1151
    G_patch; glycine rich nucleic binding domain
    cd16163
    Location:806 → 854
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
    cd12314
    Location:477 → 554
    RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
    cd12563
    Location:691 → 777
    RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

  4. XM_040646184.2 → XP_040502118.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2
    Related
    ENSGALP00010040518.1, ENSGALT00010066252.1
    Conserved Domains (4) summary
    smart00443
    Location:1108 → 1151
    G_patch; glycine rich nucleic binding domain
    cd16163
    Location:806 → 854
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
    cd12314
    Location:477 → 554
    RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
    cd12563
    Location:691 → 777
    RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

  5. XM_040646185.2 → XP_040502119.1  RNA-binding protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A3R0
    Conserved Domains (3) summary
    smart00443
    Location:1107 → 1150
    G_patch; glycine rich nucleic binding domain
    smart00360
    Location:479 → 552
    RRM; RNA recognition motif
    cd16163
    Location:805 → 853
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins

  6. XM_015292823.4 → XP_015148309.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2
    Conserved Domains (4) summary
    smart00443
    Location:1108 → 1151
    G_patch; glycine rich nucleic binding domain
    cd16163
    Location:806 → 854
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
    cd12314
    Location:477 → 554
    RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
    cd12563
    Location:691 → 777
    RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

  7. XM_040646188.2 → XP_040502122.1  RNA-binding protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A3R0
    Conserved Domains (3) summary
    smart00443
    Location:1107 → 1150
    G_patch; glycine rich nucleic binding domain
    smart00360
    Location:479 → 552
    RRM; RNA recognition motif
    cd16163
    Location:805 → 853
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins

  8. XM_040646182.2 → XP_040502116.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2
    Conserved Domains (4) summary
    smart00443
    Location:1108 → 1151
    G_patch; glycine rich nucleic binding domain
    cd16163
    Location:806 → 854
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
    cd12314
    Location:477 → 554
    RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
    cd12563
    Location:691 → 777
    RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

  9. XM_015292824.4 → XP_015148310.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2
    Conserved Domains (4) summary
    smart00443
    Location:1108 → 1151
    G_patch; glycine rich nucleic binding domain
    cd16163
    Location:806 → 854
    OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
    cd12314
    Location:477 → 554
    RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
    cd12563
    Location:691 → 777
    RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

  10. XM_046899873.1 → XP_046755829.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2776764..2831063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046926218.1 → XP_046782174.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2

  2. XM_046926213.1 → XP_046782169.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2

  3. XM_046926211.1 → XP_046782167.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2

  4. XM_046926214.1 → XP_046782170.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2

  5. XM_046926215.1 → XP_046782171.1  RNA-binding protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A3R0

  6. XM_046926216.1 → XP_046782172.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2

  7. XM_046926220.1 → XP_046782176.1  RNA-binding protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A3R0

  8. XM_046926212.1 → XP_046782168.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2

  9. XM_046926217.1 → XP_046782173.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2

  10. XM_046926219.1 → XP_046782175.1  RNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PAD2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials