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ISY1 ISY1 splicing factor homolog [ Gallus gallus (chicken) ]

Gene ID: 415968, updated on 17-Aug-2024

Summary

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Symbol
ISY1provided by CGNC
Full Name
ISY1 splicing factor homologprovided by CGNC
Primary source
CGNC:3725
See related
Ensembl:ENSGALG00010027935
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See ISY1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (5245146..5255228)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (5269580..5279659)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene makorin ring finger protein 2 Neighboring gene Raf-1 proto-oncogene, serine/threonine kinase Neighboring gene CCHC-type zinc finger nucleic acid binding protein Neighboring gene atherin-like Neighboring gene haloacid dehalogenase like hydrolase domain containing 5 like Neighboring gene KIAA1257 Neighboring gene RAB43, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA 3'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor ISY1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5245146..5255228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_414311.6 → XP_414311.1  pre-mRNA-splicing factor ISY1 homolog

    UniProtKB/TrEMBL
    A0A8V1AIC9, F1P220
    Related
    ENSGALP00010041455.1, ENSGALT00010067712.1
    Conserved Domains (1) summary
    pfam06246
    Location:1 → 261
    Isy1; Isy1-like splicing family

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5269580..5279659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682114.2 → XP_040538048.1  pre-mRNA-splicing factor ISY1 homolog

    UniProtKB/TrEMBL
    A0A8V1AIC9, F1P220
    Conserved Domains (1) summary
    pfam06246
    Location:1 → 261
    Isy1; Isy1-like splicing family
Nucleotide Protein Strain
Heading Accession and Version

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