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PHF2 PHD finger protein 2 [ Gallus gallus (chicken) ]

Gene ID: 415981, updated on 3-Dec-2024

Summary

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Symbol
PHF2provided by CGNC
Full Name
PHD finger protein 2provided by CGNC
Primary source
CGNC:3843
See related
Ensembl:ENSGALG00010027692
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PHF2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
23
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (6479323..6561226, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (6505871..6587920, complement)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417165 Neighboring gene BARX homeobox 1 Neighboring gene uncharacterized LOC107054447 Neighboring gene uncharacterized LOC121106656 Neighboring gene family with sequence similarity 120C Neighboring gene uncharacterized LOC121106657

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 2; lysine-specific demethylase PHF2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    6479323..6561226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293436.4 → XP_015148922.2  lysine-specific demethylase PHF2 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AFD0
    Conserved Domains (2) summary
    smart00558
    Location:201 → 264
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15554
    Location:7 → 53
    PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

  2. XM_414324.8 → XP_414324.3  lysine-specific demethylase PHF2 isoform X3

    UniProtKB/TrEMBL
    A0A8V1AFD0
    Related
    ENSGALP00010041027.1, ENSGALT00010067123.1
    Conserved Domains (2) summary
    smart00558
    Location:201 → 264
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15554
    Location:7 → 53
    PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

  3. XM_046900118.1 → XP_046756074.1  lysine-specific demethylase PHF2 isoform X2

    UniProtKB/TrEMBL
    A0A8V1ACQ9

  4. XM_040646699.2 → XP_040502633.1  lysine-specific demethylase PHF2 isoform X1

    UniProtKB/TrEMBL
    A0A8V1ACQ9
    Conserved Domains (2) summary
    smart00558
    Location:325 → 388
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl22851
    Location:158 → 180
    PHD_SF; PHD finger superfamily

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6505871..6587920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682165.2 → XP_040538099.1  lysine-specific demethylase PHF2 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AFD0
    Conserved Domains (2) summary
    smart00558
    Location:201 → 264
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15554
    Location:7 → 53
    PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

  2. XM_040682163.2 → XP_040538097.1  lysine-specific demethylase PHF2 isoform X3

    UniProtKB/TrEMBL
    A0A8V1AFD0
    Conserved Domains (2) summary
    smart00558
    Location:201 → 264
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15554
    Location:7 → 53
    PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

  3. XM_040682162.2 → XP_040538096.2  lysine-specific demethylase PHF2 isoform X6

  4. XM_040682161.2 → XP_040538095.2  lysine-specific demethylase PHF2 isoform X5

    UniProtKB/TrEMBL
    A0A8V1ACQ9
Nucleotide Protein Strain
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