U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PLXNA1 plexin A1 [ Gallus gallus (chicken) ]

Gene ID: 416030, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
PLXNA1provided by CGNC
Full Name
plexin A1provided by CGNC
Primary source
CGNC:4575
See related
Ensembl:ENSGALG00010022196
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
plexin-A1
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PLXNA1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
33
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (10072334..10170333)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (10100625..10198572)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein adipocyte associated 1 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 6 Neighboring gene uncharacterized LOC101748323 Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene uncharacterized LOC101748408 Neighboring gene uncharacterized LOC124417153

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
plexin-A1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10072334..10170333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004944597.5 → XP_004944654.1  plexin-A1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZNY6
    Conserved Domains (9) summary
    cd11271
    Location:43 → 516
    Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
    cd01179
    Location:963 → 1048
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:866 → 962
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1050 → 1150
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:517 → 559
    PSI; Plexin repeat
    pfam01833
    Location:1152 → 1236
    TIG; IPT/TIG domain
    pfam08337
    Location:1320 → 1894
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:572 → 662
    TIG_plexin; TIG domain
    pfam18020
    Location:716 → 810
    TIG_2; TIG domain found in plexin

  2. XM_414370.8 → XP_414370.4  plexin-A1 isoform X2

    UniProtKB/TrEMBL
    F1N804
    Conserved Domains (9) summary
    cd11271
    Location:43 → 516
    Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
    cd01179
    Location:963 → 1048
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:866 → 962
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1050 → 1150
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:517 → 559
    PSI; Plexin repeat
    pfam01833
    Location:1152 → 1236
    TIG; IPT/TIG domain
    pfam08337
    Location:1320 → 1868
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:572 → 662
    TIG_plexin; TIG domain
    pfam18020
    Location:716 → 810
    TIG_2; TIG domain found in plexin

  3. XM_015293366.4 → XP_015148852.1  plexin-A1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZNY6
    Conserved Domains (9) summary
    cd11271
    Location:43 → 516
    Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
    cd01179
    Location:963 → 1048
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:866 → 962
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1050 → 1150
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:517 → 559
    PSI; Plexin repeat
    pfam01833
    Location:1152 → 1236
    TIG; IPT/TIG domain
    pfam08337
    Location:1320 → 1894
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:572 → 662
    TIG_plexin; TIG domain
    pfam18020
    Location:716 → 810
    TIG_2; TIG domain found in plexin

  4. XM_046900006.1 → XP_046755962.1  plexin-A1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZNY6
    Related
    ENSGALP00010032527.1, ENSGALT00010053995.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    10100625..10198572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682497.2 → XP_040538431.1  plexin-A1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZNY6
    Conserved Domains (9) summary
    cd11271
    Location:43 → 516
    Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
    cd01179
    Location:963 → 1048
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:866 → 962
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1050 → 1150
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:517 → 559
    PSI; Plexin repeat
    pfam01833
    Location:1152 → 1236
    TIG; IPT/TIG domain
    pfam08337
    Location:1320 → 1894
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:572 → 662
    TIG_plexin; TIG domain
    pfam18020
    Location:716 → 810
    TIG_2; TIG domain found in plexin

  2. XM_040682499.2 → XP_040538433.1  plexin-A1 isoform X2

    Conserved Domains (9) summary
    cd11271
    Location:43 → 516
    Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
    cd01179
    Location:963 → 1048
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:866 → 962
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1050 → 1150
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:517 → 559
    PSI; Plexin repeat
    pfam01833
    Location:1152 → 1236
    TIG; IPT/TIG domain
    pfam08337
    Location:1320 → 1868
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:572 → 662
    TIG_plexin; TIG domain
    pfam18020
    Location:716 → 810
    TIG_2; TIG domain found in plexin

  3. XM_040682498.2 → XP_040538432.1  plexin-A1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZNY6
    Conserved Domains (9) summary
    cd11271
    Location:43 → 516
    Sema_plexin_A1; The Sema domain, a protein interacting module, of Plexin A1
    cd01179
    Location:963 → 1048
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:866 → 962
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1050 → 1150
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:517 → 559
    PSI; Plexin repeat
    pfam01833
    Location:1152 → 1236
    TIG; IPT/TIG domain
    pfam08337
    Location:1320 → 1894
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:572 → 662
    TIG_plexin; TIG domain
    pfam18020
    Location:716 → 810
    TIG_2; TIG domain found in plexin

  4. XM_046926698.1 → XP_046782654.1  plexin-A1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZNY6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials