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PPP4R2 protein phosphatase 4 regulatory subunit 2 [ Gallus gallus (chicken) ]

Gene ID: 416098, updated on 3-Dec-2024

Summary

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Symbol
PPP4R2provided by CGNC
Full Name
protein phosphatase 4 regulatory subunit 2provided by CGNC
Primary source
CGNC:5906
See related
Ensembl:ENSGALG00010020329
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PPP4R2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (16702901..16737072)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (16740147..16769254)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene microRNA 1711 Neighboring gene RING1 and YY1 binding protein Neighboring gene SHQ1, H/ACA ribonucleoprotein assembly factor Neighboring gene glucoside xylosyltransferase 2 Neighboring gene PDZ domain containing ring finger 3 Neighboring gene uncharacterized LOC107054413 Neighboring gene contactin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of protein phosphatase 4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase 4 regulatory subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006142.2 → NP_001006142.2  serine/threonine-protein phosphatase 4 regulatory subunit 2

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000252
    UniProtKB/Swiss-Prot
    Q5ZMU6
    UniProtKB/TrEMBL
    A0A8V0Z714
    Related
    ENSGALP00010029029.1, ENSGALT00010049095.1
    Conserved Domains (1) summary
    COG5271
    Location:192 → 405
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    16702901..16737072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046899986.1 → XP_046755942.1  serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZE92

  2. XM_046899987.1 → XP_046755943.1  serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZDU5
    Related
    ENSGALP00010029033.1, ENSGALT00010049101.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    16740147..16769254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046926469.1 → XP_046782425.1  serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X3

  2. XM_046926470.1 → XP_046782426.1  serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZDU5
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZMU6.1 GenPept UniProtKB/Swiss-Prot:Q5ZMU6

Gene LinkOut

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