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PDZRN3 PDZ domain containing ring finger 3 [ Gallus gallus (chicken) ]

Gene ID: 416099, updated on 26-Nov-2024

Summary

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Official Symbol
PDZRN3provided by CGNC
Official Full Name
PDZ domain containing ring finger 3provided by CGNC
Primary source
CGNC:5913
See related
Ensembl:ENSGALG00010020350
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PDZRN3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (16792403..16913212, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (16824592..16945393, complement)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene SHQ1, H/ACA ribonucleoprotein assembly factor Neighboring gene glucoside xylosyltransferase 2 Neighboring gene protein phosphatase 4 regulatory subunit 2 Neighboring gene uncharacterized LOC107054413 Neighboring gene contactin 3 Neighboring gene cell adhesion molecule L1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuromuscular junction development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuromuscular junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ domain-containing RING finger protein 3; E3 ubiquitin-protein ligase PDZRN3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    16792403..16913212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_414432.8 → XP_414432.3  E3 ubiquitin-protein ligase PDZRN3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZKD6
    Related
    ENSGALP00010029066.1, ENSGALT00010049162.1
    Conserved Domains (3) summary
    smart00228
    Location:247 → 336
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:418 → 500
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd16718
    Location:17 → 58
    RING-HC_LNX3; RING finger, HC subclass, found in ligand of numb protein X 3 (LNX3)

  2. XM_015293224.4 → XP_015148710.2  E3 ubiquitin-protein ligase PDZRN3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZCX1
    Related
    ENSGALP00010029062.1, ENSGALT00010049155.1
    Conserved Domains (2) summary
    COG0793
    Location:37 → 221
    CtpA; C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]
    cd00992
    Location:137 → 219
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    16824592..16945393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682177.2 → XP_040538111.1  E3 ubiquitin-protein ligase PDZRN3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZKD6
    Conserved Domains (3) summary
    smart00228
    Location:247 → 336
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:418 → 500
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd16718
    Location:17 → 58
    RING-HC_LNX3; RING finger, HC subclass, found in ligand of numb protein X 3 (LNX3)

  2. XM_040682178.2 → XP_040538112.1  E3 ubiquitin-protein ligase PDZRN3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZCX1
    Conserved Domains (2) summary
    COG0793
    Location:37 → 221
    CtpA; C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones]
    cd00992
    Location:137 → 219
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein Strain
Heading Accession and Version

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