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CNTN3 contactin 3 [ Gallus gallus (chicken) ]

Gene ID: 416101, updated on 17-Aug-2024

Summary

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Official Symbol
CNTN3provided by CGNC
Official Full Name
contactin 3provided by CGNC
Primary source
CGNC:5947
See related
Ensembl:ENSGALG00010020369
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
contactin-3
Orthologs
human mouse all
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Genomic context

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See CNTN3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (17077773..17168249, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (17115800..17206248, complement)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene glucoside xylosyltransferase 2 Neighboring gene protein phosphatase 4 regulatory subunit 2 Neighboring gene PDZ domain containing ring finger 3 Neighboring gene uncharacterized LOC107054413 Neighboring gene cell adhesion molecule L1 like Neighboring gene uncharacterized LOC107054412 Neighboring gene uncharacterized LOC107054409

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-3
Names
contactin 3 (plasmacytoma associated)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    17077773..17168249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293225.4 → XP_015148711.2  contactin-3

    UniProtKB/TrEMBL
    A0A8V0ZE18, A0A8V0ZKG1
    Related
    ENSGALP00010029095.1, ENSGALT00010049209.1
    Conserved Domains (6) summary
    smart00060
    Location:803 → 883
    FN3; Fibronectin type 3 domain
    smart00409
    Location:319 → 396
    IG; Immunoglobulin
    smart00410
    Location:30 → 104
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:226 → 230
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:220 → 303
    Ig; Immunoglobulin domain

  2. XM_414433.7 → XP_414433.5  contactin-3

    UniProtKB/TrEMBL
    A0A8V0ZE18, A0A8V0ZKG1
    Related
    ENSGALP00010029092.1, ENSGALT00010049206.1
    Conserved Domains (6) summary
    smart00060
    Location:803 → 883
    FN3; Fibronectin type 3 domain
    smart00409
    Location:319 → 396
    IG; Immunoglobulin
    smart00410
    Location:30 → 104
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:226 → 230
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:220 → 303
    Ig; Immunoglobulin domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    17115800..17206248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682179.2 → XP_040538113.1  contactin-3

    UniProtKB/TrEMBL
    A0A8V0ZKG1
    Conserved Domains (5) summary
    smart00060
    Location:803 → 883
    FN3; Fibronectin type 3 domain
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:398 → 404
    Ig; Ig strand A [structural motif]
    cd04968
    Location:127 → 215
    IgI_3_Contactin; Third immunoglobulin (Ig) domain of contactin; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:398 → 498
    Ig; Immunoglobulin domain

  2. XM_040682180.2 → XP_040538114.1  contactin-3

    UniProtKB/TrEMBL
    A0A8V0ZKG1
    Conserved Domains (5) summary
    smart00060
    Location:803 → 883
    FN3; Fibronectin type 3 domain
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:398 → 404
    Ig; Ig strand A [structural motif]
    cd04968
    Location:127 → 215
    IgI_3_Contactin; Third immunoglobulin (Ig) domain of contactin; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:398 → 498
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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