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CXXC5 CXXC finger protein 5 [ Gallus gallus (chicken) ]

Gene ID: 416138, updated on 3-Dec-2024

Summary

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Official Symbol
CXXC5provided by CGNC
Official Full Name
CXXC finger protein 5provided by CGNC
Primary source
CGNC:581
See related
Ensembl:ENSGALG00010011913
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CXXC5 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (743068..772086, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (950413..979435, complement)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene pleckstrin and Sec7 domain containing 2 Neighboring gene uncharacterized LOC121106714 Neighboring gene proline-rich protein HaeIII subfamily 1-like Neighboring gene ubiquitin conjugating enzyme E2 D2 Neighboring gene transmembrane protein 173

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methyl-CpG binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CXXC-type zinc finger protein 5
Names
CXXC finger 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    743068..772086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293549.4 → XP_015149035.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A8V0Y6Q9, F1NCW6
    Related
    ENSGALP00010016354.1, ENSGALT00010028499.1
    Conserved Domains (1) summary
    pfam02008
    Location:209 → 250
    zf-CXXC; CXXC zinc finger domain

  2. XM_015293550.4 → XP_015149036.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A8V0Y6Q9, F1NCW6
    Conserved Domains (1) summary
    pfam02008
    Location:209 → 250
    zf-CXXC; CXXC zinc finger domain

  3. XM_046900525.1 → XP_046756481.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A8V0Y6Q9, F1NCW6

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    950413..979435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682802.2 → XP_040538736.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A8V0Y6Q9, F1NCW6
    Conserved Domains (1) summary
    pfam02008
    Location:209 → 250
    zf-CXXC; CXXC zinc finger domain

  2. XM_040682803.2 → XP_040538737.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A8V0Y6Q9, F1NCW6
    Conserved Domains (1) summary
    pfam02008
    Location:209 → 250
    zf-CXXC; CXXC zinc finger domain

  3. XM_046927242.1 → XP_046783198.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A8V0Y6Q9, F1NCW6

  4. XM_046927243.1 → XP_046783199.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A8V0Y6Q9, F1NCW6

  5. XM_040682804.2 → XP_040538738.1  CXXC-type zinc finger protein 5

    UniProtKB/TrEMBL
    A0A8V0Y6Q9, F1NCW6
    Conserved Domains (1) summary
    pfam02008
    Location:209 → 250
    zf-CXXC; CXXC zinc finger domain
Nucleotide Protein Strain
Heading Accession and Version

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