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SFXN1 sideroflexin 1 [ Gallus gallus (chicken) ]

Gene ID: 416221, updated on 3-Dec-2024

Summary

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Symbol
SFXN1provided by CGNC
Full Name
sideroflexin 1provided by CGNC
Primary source
CGNC:2371
See related
Ensembl:ENSGALG00010012149
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SFXN1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (9634295..9669465)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (9640109..9675288)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene msh homeobox 2 Neighboring gene uncharacterized LOC107054519 Neighboring gene uncharacterized LOC121106691 Neighboring gene dopamine receptor D1 Neighboring gene kinesin family member 20A Neighboring gene bromodomain containing 8 Neighboring gene NHP2 ribonucleoprotein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiling of chicken primordial germ cell ESTs. Han JY, et al. BMC Genomics, 2006 Aug 30. PMID 16939661, Free PMC Article
  2. Analysis of chicken embryonic gonad expressed sequenced tags. Shin JH, et al. Anim Genet, 2006 Feb. PMID 16441308
  3. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Abdrakhmanov I, et al. Genome Res, 2000 Dec. PMID 11116100, Free PMC Article
  4. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in serine import into mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sideroflexin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277743.1 → NP_001264672.1  sideroflexin-1

    Status: VALIDATED

    Source sequence(s)
    AJ396734, CN235276, CV854486, DR410950
    UniProtKB/TrEMBL
    A0A8V0YLD0
    Related
    ENSGALP00010016918.1, ENSGALT00010029174.1
    Conserved Domains (1) summary
    pfam03820
    Location:10 → 322
    Mtc; Tricarboxylate carrier

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9634295..9669465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025154842.3 → XP_025010610.3  sideroflexin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YEI2, A0A8V0YLD0
    Related
    ENSGALP00010016923.1, ENSGALT00010029181.1

  2. XM_046900347.1 → XP_046756303.1  sideroflexin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YEG8

  3. XM_046900346.1 → XP_046756302.1  sideroflexin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YLD0

  4. XM_040646893.2 → XP_040502827.1  sideroflexin-1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q3AED9, A0A8V0YEG8
    Related
    ENSGALP00010016891.1, ENSGALT00010029138.1
    Conserved Domains (1) summary
    TIGR00798
    Location:8 → 258
    mtc; tricarboxylate carrier

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9640109..9675288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046926944.1 → XP_046782900.1  sideroflexin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YLD0

  2. XM_046926946.1 → XP_046782902.1  sideroflexin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YLD0

  3. XM_046926945.1 → XP_046782901.1  sideroflexin-1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q3AED9, A0A8V0YEG8
Nucleotide Protein Strain
Heading Accession and Version

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