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CDHR2 cadherin related family member 2 [ Gallus gallus (chicken) ]

Gene ID: 416223, updated on 17-Aug-2024

Summary

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Symbol
CDHR2provided by CGNC
Full Name
cadherin related family member 2provided by CGNC
Primary source
CGNC:50197
See related
Ensembl:ENSGALG00010010179
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
PCDH24
Orthologs
human mouse all
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Genomic context

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See CDHR2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
33
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (9973199..9981756, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (9975366..9984969, complement)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene synuclein beta Neighboring gene G protein regulated inducer of neurite outgrowth 1 Neighboring gene microRNA 7460 Neighboring gene uncharacterized LOC121106750 Neighboring gene ring finger protein 44 Neighboring gene Fas associated factor family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: cadherin-related family member 2; cadherin-related family member 2
Names
protocadherin 24

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9973199..9981756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293880.4 → XP_015149366.3  cadherin-related family member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y4A1
    Related
    ENSGALP00010013784.1, ENSGALT00010024212.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9975366..9984969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040683077.2 → XP_040539011.2  LOW QUALITY PROTEIN: cadherin-related family member 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials