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HAVCR1 hepatitis A virus cellular receptor 1 [ Gallus gallus (chicken) ]

Gene ID: 416249, updated on 3-Dec-2024

Summary

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Symbol
HAVCR1provided by CGNC
Full Name
hepatitis A virus cellular receptor 1provided by CGNC
Primary source
CGNC:50208
See related
Ensembl:ENSGALG00010015098
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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Genomic context

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See HAVCR1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (11062466..11071522)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (11064951..11074019)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene IL2 inducible T-cell kinase Neighboring gene mediator complex subunit 7 Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene uncharacterized LOC100857665 Neighboring gene sarcoglycan delta Neighboring gene mitochondrial ribosomal protein L22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiling of chicken primordial germ cell ESTs. Han JY, et al. BMC Genomics, 2006 Aug 30. PMID 16939661, Free PMC Article
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  3. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
hepatitis A virus cellular receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030617.3 → NP_001025788.3  hepatitis A virus cellular receptor 2 isoform 3 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon in the 3' coding region, compared to variant 1, which results in a frameshift and an isoform (3) with a longer and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    JAENSK010000256
    UniProtKB/TrEMBL
    A0A8V0YJP0
    Related
    ENSGALP00010021150.1, ENSGALT00010036361.1
    Conserved Domains (2) summary
    PHA03292
    Location:75 → 215
    PHA03292; envelope glycoprotein I; Provisional
    smart00409
    Location:25 → 127
    IG; Immunoglobulin

  2. NM_001305578.1 → NP_001292507.1  hepatitis A virus cellular receptor 2 isoform 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1.
    Source sequence(s)
    AJ452245, AJ720096, AJ721632, BU302973
    UniProtKB/TrEMBL
    A0A8V0YR76
    Related
    ENSGALP00010021160.1, ENSGALT00010036373.1
    Conserved Domains (2) summary
    smart00410
    Location:25 → 127
    IG_like; Immunoglobulin like
    pfam07686
    Location:25 → 128
    V-set; Immunoglobulin V-set domain

  3. NM_001305579.2 → NP_001292508.1  hepatitis A virus cellular receptor 2 isoform 2 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon in the 5' coding region, compared to variant 1, and encodes a shorter isoform (2), compared to isoform 1.
    Source sequence(s)
    JAENSK010000256
    UniProtKB/TrEMBL
    A0A8V0YR76
    Conserved Domains (2) summary
    smart00410
    Location:25 → 127
    IG_like; Immunoglobulin like
    pfam07686
    Location:25 → 128
    V-set; Immunoglobulin V-set domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    11062466..11071522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040646902.2 → XP_040502836.1  hepatitis A virus cellular receptor 2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YR76
    Conserved Domains (1) summary
    smart00409
    Location:25 → 127
    IG; Immunoglobulin

  2. XM_040646900.2 → XP_040502834.1  hepatitis A virus cellular receptor 2 isoform X2

    Conserved Domains (1) summary
    smart00409
    Location:25 → 127
    IG; Immunoglobulin

  3. XM_040646898.2 → XP_040502832.1  hepatitis A virus cellular receptor 2 isoform X1

    Conserved Domains (1) summary
    smart00409
    Location:25 → 127
    IG; Immunoglobulin

  4. XM_040646903.2 → XP_040502837.1  hepatitis A virus cellular receptor 2 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YR76
    Conserved Domains (1) summary
    smart00409
    Location:25 → 127
    IG; Immunoglobulin

  5. XM_040646901.2 → XP_040502835.1  hepatitis A virus cellular receptor 2 isoform X3

    Conserved Domains (1) summary
    smart00409
    Location:25 → 127
    IG; Immunoglobulin

  6. XM_040646904.2 → XP_040502838.1  hepatitis A virus cellular receptor 2 isoform X6

    UniProtKB/TrEMBL
    A0A8V0YR26
    Related
    ENSGALP00010021147.1, ENSGALT00010036357.1
    Conserved Domains (1) summary
    smart00409
    Location:25 → 127
    IG; Immunoglobulin

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11064951..11074019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046926961.1 → XP_046782917.1  hepatitis A virus cellular receptor 2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YR76

  2. XM_046926959.1 → XP_046782915.1  hepatitis A virus cellular receptor 2 isoform X2

  3. XM_046926958.1 → XP_046782914.1  hepatitis A virus cellular receptor 2 isoform X1

  4. XM_046926962.1 → XP_046782918.1  hepatitis A virus cellular receptor 2 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YR76

  5. XM_046926960.1 → XP_046782916.1  hepatitis A virus cellular receptor 2 isoform X3

  6. XM_046926963.1 → XP_046782919.1  hepatitis A virus cellular receptor 2 isoform X6

    UniProtKB/TrEMBL
    A0A8V0YR26
Nucleotide Protein Strain
Heading Accession and Version

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