U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FAXDC2 fatty acid hydroxylase domain containing 2 [ Gallus gallus (chicken) ]

Gene ID: 416256, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
FAXDC2provided by CGNC
Official Full Name
fatty acid hydroxylase domain containing 2provided by CGNC
Primary source
CGNC:2916
See related
Ensembl:ENSGALG00010015697
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C5orf4; C13H5ORF4
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See FAXDC2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (11644386..11659254)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (11645907..11660784) , (11667100..11672179)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene gem nuclear organelle associated protein 5 Neighboring gene CCR4-NOT transcription complex subunit 8 Neighboring gene uncharacterized LOC107054526 Neighboring gene La ribonucleoprotein domain family member 1 Neighboring gene heart and neural crest derivatives expressed 1 Neighboring gene microRNA 1778

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Expressed sequence tag analysis of Eimeria-stimulated intestinal intraepithelial lymphocytes in chickens. Min W, et al. Mol Biotechnol, 2005 Jun. PMID 15920284
  2. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-4 methylsterol oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
fatty acid hydroxylase domain-containing protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001285883.2 → NP_001272812.1  fatty acid hydroxylase domain-containing protein 2

    See identical proteins and their annotated locations for NP_001272812.1

    Status: PROVISIONAL

    Source sequence(s)
    BM491263, BU248049, BX262507, CD727927, CD727929, JAENSK010000256
    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6
    Conserved Domains (1) summary
    pfam04116
    Location:182 → 301
    FA_hydroxylase; Fatty acid hydroxylase superfamily

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    11644386..11659254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046900354.1 → XP_046756310.1  fatty acid hydroxylase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6

  2. XM_046900358.1 → XP_046756314.1  fatty acid hydroxylase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6

  3. XM_046900357.1 → XP_046756313.1  fatty acid hydroxylase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6

  4. XM_046900361.1 → XP_046756317.1  fatty acid hydroxylase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6

  5. XM_046900360.1 → XP_046756316.1  fatty acid hydroxylase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6

  6. XM_046900362.1 → XP_046756318.1  fatty acid hydroxylase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6

  7. XM_046900355.1 → XP_046756311.1  fatty acid hydroxylase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6

  8. XM_046900356.1 → XP_046756312.1  fatty acid hydroxylase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6
    Related
    ENSGALP00010021828.1, ENSGALT00010037799.1

  9. XM_040646906.2 → XP_040502840.1  fatty acid hydroxylase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YTA5, F1NZP6
    Related
    ENSGALP00010021827.1, ENSGALT00010037797.1
    Conserved Domains (1) summary
    pfam04116
    Location:182 → 301
    FA_hydroxylase; Fatty acid hydroxylase superfamily

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11645907..11660784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

  2. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11667100..11672179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046927138.1 → XP_046783094.1  fatty acid hydroxylase domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YTA5

  2. XM_046927142.1 → XP_046783098.1  fatty acid hydroxylase domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YTA5

  3. XM_046927141.1 → XP_046783097.1  fatty acid hydroxylase domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YTA5

  4. XM_046927145.1 → XP_046783101.1  fatty acid hydroxylase domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YTA5

  5. XM_046927144.1 → XP_046783100.1  fatty acid hydroxylase domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YTA5

  6. XM_046927146.1 → XP_046783102.1  fatty acid hydroxylase domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YTA5

  7. XM_046927139.1 → XP_046783095.1  fatty acid hydroxylase domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YTA5

  8. XM_046927140.1 → XP_046783096.1  fatty acid hydroxylase domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YTA5

  9. XM_040682695.2 → XP_040538629.1  fatty acid hydroxylase domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YTA5
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.