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PKD2L2 polycystin 2 like 2, transient receptor potential cation channel [ Gallus gallus (chicken) ]

Gene ID: 416298, updated on 3-Dec-2024

Summary

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Symbol
PKD2L2provided by CGNC
Full Name
polycystin 2 like 2, transient receptor potential cation channelprovided by CGNC
Primary source
CGNC:4592
See related
Ensembl:ENSGALG00010015564
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PKD2L2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (14009534..14019961, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (14022127..14032553, complement)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106740 Neighboring gene Wnt family member 8A Neighboring gene thymosin beta 4B Neighboring gene family with sequence similarity 13, member B Neighboring gene kelch like family member 3 Neighboring gene myotilin Neighboring gene neuropeptide Y receptor Y6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystic kidney disease 2-like 2 protein
Names
polycystic kidney disease 2-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    14009534..14019961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_414617.8 → XP_414617.4  polycystic kidney disease 2-like 2 protein isoform X2

    UniProtKB/TrEMBL
    A0A8V0YUB0
    Related
    ENSGALP00010021693.1, ENSGALT00010037455.1
    Conserved Domains (1) summary
    pfam08016
    Location:85 → 504
    PKD_channel; Polycystin cation channel

  2. XM_046900470.1 → XP_046756426.1  polycystic kidney disease 2-like 2 protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0YL71, A0A8V0YUB0
    Related
    ENSGALP00010021697.1, ENSGALT00010037463.1

  3. XM_046900472.1 → XP_046756428.1  polycystic kidney disease 2-like 2 protein isoform X5

    UniProtKB/TrEMBL
    A0A8V0YUB0

  4. XM_004944974.5 → XP_004945031.1  polycystic kidney disease 2-like 2 protein isoform X4

    UniProtKB/TrEMBL
    A0A8V0YUB0, F1NE51
    Related
    ENSGALP00010021682.1, ENSGALT00010037437.1
    Conserved Domains (1) summary
    pfam08016
    Location:70 → 489
    PKD_channel; Polycystin cation channel

  5. XM_046900471.1 → XP_046756427.1  polycystic kidney disease 2-like 2 protein isoform X3

    UniProtKB/TrEMBL
    A0A8V0YUB0

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    14022127..14032553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682934.2 → XP_040538868.1  polycystic kidney disease 2-like 2 protein isoform X2

    UniProtKB/TrEMBL
    A0A8V0YUB0
    Conserved Domains (1) summary
    pfam08016
    Location:85 → 504
    PKD_channel; Polycystin cation channel

  2. XM_046927193.1 → XP_046783149.1  polycystic kidney disease 2-like 2 protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0YL71, A0A8V0YUB0

  3. XM_046927195.1 → XP_046783151.1  polycystic kidney disease 2-like 2 protein isoform X5

    UniProtKB/TrEMBL
    A0A8V0YUB0

  4. XM_040682935.2 → XP_040538869.1  polycystic kidney disease 2-like 2 protein isoform X4

    UniProtKB/TrEMBL
    A0A8V0YUB0, F1NE51
    Conserved Domains (1) summary
    pfam08016
    Location:70 → 489
    PKD_channel; Polycystin cation channel

  5. XM_046927194.1 → XP_046783150.1  polycystic kidney disease 2-like 2 protein isoform X3

    UniProtKB/TrEMBL
    A0A8V0YUB0
Nucleotide Protein
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