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JADE2 jade family PHD finger 2 [ Gallus gallus (chicken) ]

Gene ID: 416315, updated on 3-Dec-2024

Summary

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Symbol
JADE2provided by CGNC
Full Name
jade family PHD finger 2provided by CGNC
Primary source
CGNC:4840
See related
Ensembl:ENSGALG00010013261
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
PHF15
Orthologs
human mouse all
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Genomic context

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See JADE2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (15364274..15421541, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (15376051..15433347, complement)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106746 Neighboring gene calcium modulating ligand Neighboring gene SEC24 homolog A, COPII coat complex component Neighboring gene nascent polypeptide-associated complex subunit alpha, muscle-specific form-like Neighboring gene secretion associated Ras related GTPase 1B Neighboring gene uncharacterized LOC121106747 Neighboring gene uncharacterized LOC121106748

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Jade-2; E3 ubiquitin-protein ligase Jade-2
Names
PHD finger protein 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    15364274..15421541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046900485.1 → XP_046756441.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YIN0

  2. XM_015294092.4 → XP_015149578.2  E3 ubiquitin-protein ligase Jade-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YIN0
    Conserved Domains (3) summary
    COG5141
    Location:137 → 505
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:674 → 835
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

  3. XM_025155032.3 → XP_025010800.2  E3 ubiquitin-protein ligase Jade-2 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YIN0
    Related
    ENSGALP00010018681.1, ENSGALT00010031878.1
    Conserved Domains (3) summary
    COG5141
    Location:161 → 529
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:655 → 816
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:278 → 388
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

  4. XM_015294091.4 → XP_015149577.2  E3 ubiquitin-protein ligase Jade-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YIN0, A0A8V0YJE4
    Related
    ENSGALP00010018684.1, ENSGALT00010031881.1
    Conserved Domains (3) summary
    COG5141
    Location:161 → 529
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:698 → 859
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:278 → 388
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

  5. XM_414632.7 → XP_414632.4  E3 ubiquitin-protein ligase Jade-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YIN0
    Conserved Domains (3) summary
    COG5141
    Location:137 → 505
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:674 → 835
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    15376051..15433347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046927209.1 → XP_046783165.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YIN0

  2. XM_040682985.2 → XP_040538919.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YIN0
    Conserved Domains (3) summary
    COG5141
    Location:137 → 505
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:674 → 835
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

  3. XM_040682984.2 → XP_040538918.1  E3 ubiquitin-protein ligase Jade-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YIN0
    Conserved Domains (3) summary
    COG5141
    Location:161 → 529
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:698 → 859
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:278 → 388
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

  4. XM_040682983.2 → XP_040538917.1  E3 ubiquitin-protein ligase Jade-2 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YIN0
    Conserved Domains (3) summary
    COG5141
    Location:235 → 603
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:729 → 890
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:352 → 462
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

  5. XM_040682982.2 → XP_040538916.1  E3 ubiquitin-protein ligase Jade-2 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YIN0
    Conserved Domains (3) summary
    COG5141
    Location:235 → 603
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:772 → 933
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:352 → 462
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

  6. XM_040682986.1 → XP_040538920.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YIN0
    Conserved Domains (3) summary
    COG5141
    Location:137 → 505
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    PRK07764
    Location:674 → 835
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd15705
    Location:254 → 364
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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