U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

USP42 ubiquitin specific peptidase 42 [ Gallus gallus (chicken) ]

Gene ID: 416431, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
USP42provided by CGNC
Official Full Name
ubiquitin specific peptidase 42provided by CGNC
Primary source
CGNC:2460
See related
Ensembl:ENSGALG00010021756
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See USP42 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (951594..970918, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (950179..969574, complement)

Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene stannin Neighboring gene uncharacterized LOC101751635 Neighboring gene lipopolysaccharide induced TNF factor Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 1 Neighboring gene ankyrin repeat domain 61 Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ubiquitin carboxyl-terminal hydrolase 42
XP_015149747.1
XP_015149752.1
XP_040503572.1
XP_040503573.1
XP_040539744.1
XP_040539745.1
XP_040539747.1
XP_040539748.1
XP_046756841.1
XP_046756842.1
XP_046756843.1
XP_046756844.1
XP_046756845.1
XP_046756846.1
XP_046756847.1
XP_046756848.1
XP_046756849.1
XP_046756850.1
XP_046756851.1
XP_046756852.1
XP_046756853.1
XP_046756854.1
XP_046756855.1
XP_046783787.1
XP_046783788.1
XP_046783789.1
XP_046783790.1
XP_046783791.1
XP_046783792.1
XP_046783793.1
XP_046783794.1
XP_046783795.1
XP_046783796.1
XP_046783797.1
XP_046783798.1
XP_046783799.1
XP_046783800.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    951594..970918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015294266.4 → XP_015149752.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62
    Related
    ENSGALP00010031797.1, ENSGALT00010052891.1
    Conserved Domains (3) summary
    cd02661
    Location:105 → 405
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR01622
    Location:943 → 1055
    SF-CC1; splicing factor, CC1-like family
    TIGR01642
    Location:1022 → 1146
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  2. XM_046900886.1 → XP_046756842.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62
    Related
    ENSGALP00010031800.1, ENSGALT00010052894.1

  3. XM_046900895.1 → XP_046756851.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  4. XM_046900885.1 → XP_046756841.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  5. XM_046900890.1 → XP_046756846.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  6. XM_046900899.1 → XP_046756855.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  7. XM_046900897.1 → XP_046756853.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  8. XM_046900894.1 → XP_046756850.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  9. XM_046900887.1 → XP_046756843.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  10. XM_046900891.1 → XP_046756847.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  11. XM_046900893.1 → XP_046756849.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  12. XM_046900889.1 → XP_046756845.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  13. XM_040647638.2 → XP_040503572.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62
    Conserved Domains (3) summary
    cd02661
    Location:105 → 405
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR01622
    Location:943 → 1055
    SF-CC1; splicing factor, CC1-like family
    TIGR01642
    Location:1022 → 1146
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  14. XM_046900892.1 → XP_046756848.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  15. XM_046900896.1 → XP_046756852.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  16. XM_046900888.1 → XP_046756844.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  17. XM_040647639.2 → XP_040503573.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62
    Conserved Domains (3) summary
    cd02661
    Location:105 → 405
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR01622
    Location:943 → 1055
    SF-CC1; splicing factor, CC1-like family
    TIGR01642
    Location:1022 → 1146
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  18. XM_046900898.1 → XP_046756854.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  19. XM_015294261.4 → XP_015149747.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62
    Conserved Domains (3) summary
    cd02661
    Location:105 → 405
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR01622
    Location:943 → 1055
    SF-CC1; splicing factor, CC1-like family
    TIGR01642
    Location:1022 → 1146
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    950179..969574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040683811.2 → XP_040539745.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62
    Conserved Domains (3) summary
    cd02661
    Location:105 → 405
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR01622
    Location:943 → 1055
    SF-CC1; splicing factor, CC1-like family
    TIGR01642
    Location:1022 → 1146
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  2. XM_046927832.1 → XP_046783788.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  3. XM_046927841.1 → XP_046783797.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  4. XM_046927831.1 → XP_046783787.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  5. XM_046927836.1 → XP_046783792.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  6. XM_046927844.1 → XP_046783800.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  7. XM_046927843.1 → XP_046783799.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  8. XM_046927840.1 → XP_046783796.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  9. XM_046927833.1 → XP_046783789.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  10. XM_046927837.1 → XP_046783793.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  11. XM_046927839.1 → XP_046783795.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  12. XM_046927835.1 → XP_046783791.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  13. XM_040683813.2 → XP_040539747.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62
    Conserved Domains (3) summary
    cd02661
    Location:105 → 405
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR01622
    Location:943 → 1055
    SF-CC1; splicing factor, CC1-like family
    TIGR01642
    Location:1022 → 1146
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  14. XM_046927838.1 → XP_046783794.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  15. XM_046927842.1 → XP_046783798.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  16. XM_046927834.1 → XP_046783790.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62

  17. XM_040683814.2 → XP_040539748.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62
    Conserved Domains (3) summary
    cd02661
    Location:105 → 405
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR01622
    Location:943 → 1055
    SF-CC1; splicing factor, CC1-like family
    TIGR01642
    Location:1022 → 1146
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

  18. XM_040683810.2 → XP_040539744.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A8V0ZES5, A0A8V0ZM62
    Conserved Domains (3) summary
    cd02661
    Location:105 → 405
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR01622
    Location:943 → 1055
    SF-CC1; splicing factor, CC1-like family
    TIGR01642
    Location:1022 → 1146
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials